Single-cell RNA-seq of Lotus japonicus provide insights into identification and function of root cell types of legume
文献类型： 外文期刊
作者： Sun, Zhanmin 1 ; Jiang, Sanjie 2 ; Wang, Dan 3 ; Li, Linxia 1 ; Liu, Boxin 2 ; Ran, Qifan 4 ; Hu, Lizhen 5 ; Xiong, Junbo 6 ; Tang, Yixiong 1 ; Gu, Xiaofeng 1 ; Wu, Yanmin 1 ; Liang, Zhe 1 ;
作者机构： 1.Chinese Acad Agr Sci, Biotechnol Res Inst, Beijing 100081, Peoples R China
2.BGI Genom, Shenzhen 518083, Peoples R China
3.China West Normal Univ, Key Lab Southwest China Wildlife Resources Conserv, Nanchong 637002, Peoples R China
4.Chongqing Acad Anim Sci, Chongqing 402460, Peoples R China
5.Jiangxi Acad Agr Sci, Inst Anim & Vet Sci, Nanchang 330200, Peoples R China
6.Hubei Acad Agr Sci, Inst Anim & Vet Sci, Hubei Key Lab Anim Embryo & Mol Breeding, Wuhan 430072, Peoples R China
关键词： genome; legume; Lotus japonicus; single-cell RNA-seq
期刊名称：JOURNAL OF INTEGRATIVE PLANT BIOLOGY （ 影响因子：11.4； 五年影响因子：10.1 ）
ISSN： 1672-9072
年卷期： 2023 年 65 卷 5 期
页码：
收录情况： SCI
摘要： The roots of legume plant play a crucial role in nitrogen fixation. However, the transcriptomes of different cell types of legume root and their functions remain largely unknown. Here, we performed single-cell RNA sequencing and profiled more than 22,000 single cells from root tips of Lotus japonicus, a model species of legume. We identified seven clusters corresponding to seven major cell types, which were validated by in situ hybridization. Further analysis revealed regulatory programs including phytohormone and nodulation associated with specific cell types, and revealed conserved and diverged features for the cell types. Our results represent the first single-cell resolution transcriptome for legume root tips and a valuable resource for studying the developmental and physiological functions of various cell types in legumes.
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