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Discovery and expression profile analysis of AP2/ERF family genes from Triticum aestivum

文献类型： 外文期刊

作者： Zhuang, Jing 1 ; Chen, Jian-Min 3 ; Yao, Quan-Hong 1 ; Xiong, Fei 3 ; Sun, Chao-Cai 1 ; Zhou, Xi-Rong 1 ; Zhang, Jian; 1 ;

作者机构： 1.Shanghai Acad Agr Sci, Shanghai 201106, Peoples R China

2.Alberta Res Council, Vegreville, AB T9C 1T4, Canada

3.Yangzhou Univ, Yangzhou 225009, Peoples R China

关键词： Arabidopsis thaliana;Triticum aestivum.;Transcription factor;AP2/ERF;Expression profile;Internet resource.

期刊名称：MOLECULAR BIOLOGY REPORTS （ 影响因子：2.316； 五年影响因子：2.357 ）

ISSN：

年卷期：

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收录情况： SCI

摘要： Throughout its development, common wheat, Triticum aestivum responds to different kinds of adverse abiotic and biotic stress by expressing specific genes that allow it to adapt to these stresses. In this process, genes in the AP2/ERF family encode transcriptional regulators involved in diverse developmental and physiological processes play critical roles. Here, we established an extensive picture of the AP2/ERF family genes in wheat. From 960, 174 ESTs of T. aestivum, 117 putative AP2/ERF family genes were identified by in silico analysis based on the presence of the conserved AP2/ERF domain amino acid sequence of Arabidopsis thaliana. Based on the model species A. thaliana, the AP2/ERF TFs from T. aestivum were classified into five subfamilies with the following number of members: DREB (57), ERF (47), AP2 (9), RAV (3) and Soloist (1). Using the available EST information as a source of expression data, the putative AP2/ERF family genes from T. aestivum were detected in nine kinds of tissues. Transcripts of the genes were shown to be most abundant in leaves, followed by roots and seeds, and the least abundant in stem. Most of the T. aestivum AP2/ERF family genes showed some tissue specificity.

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