Genome-Wide Characterization and Phylogenetic and Stress Response Expression Analysis of the MADS-Box Gene Family in Litchi (Litchi chinensis Sonn.)
文献类型： 外文期刊
作者： Yang, Jie 1 ; Chen, Rong 1 ; Liu, Wei 1 ; Xiang, Xu 1 ; Fan, Chao 1 ;
作者机构： 1.Guangdong Acad Agr Sci, Minist Agr & Rural Affairs,Inst Fruit Tree Res, Guangdong Prov Key Lab Trop & Subtrop Fruit Tree R, Key Lab South Subtrop Fruit Biol & Genet Resource, Guangzhou 510640, Peoples R China
关键词： litchi; MADS-box gene family; phylogenetic analysis; stress response; gene expression
期刊名称：INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES （ 影响因子：5.6； 五年影响因子：6.2 ）
ISSN： 1661-6596
年卷期： 2024 年 25 卷 3 期
页码：
收录情况： SCI
摘要： The MADS-box protein is an important transcription factor in plants and plays an important role in regulating the plant abiotic stress response. In this study, a total of 94 MADS-box genes were predicted in the litchi genome, and these genes were widely distributed on all the chromosomes. The LcMADS-box gene family was divided into six subgroups (M alpha, M beta, M gamma, M delta, MIKC, and UN) based on their phylogenetical relationships with Arabidopsis, and the closely linked subgroups exhibited more similarity in terms of motif distribution and intron/exon numbers. Transcriptome analysis indicated that LcMADS-box gene expression varied in different tissues, which can be divided into universal expression and specific expression. Furthermore, we further validated that LcMADS-box genes can exhibit different responses to various stresses using quantitative real-time PCR (qRT-PCR). Moreover, physicochemical properties, subcellular localization, collinearity, and cis-acting elements were also analyzed. The findings of this study provide valuable insights into the MADS-box gene family in litchi, specifically in relation to stress response. The identification of hormone-related and stress-responsive cis-acting elements in the MADS-box gene promoters suggests their involvement in stress signaling pathways. This study contributes to the understanding of stress tolerance mechanisms in litchi and highlights potential regulatory mechanisms underlying stress responses.
- 相关文献
作者其他论文 更多>>
-
Transcriptome and Metabolome Analysis of Rice Cultivar CBB23 after Inoculation by Xanthomonas oryzae pv. oryzae Strains AH28 and PXO99A
作者：Chen, Pingli;Liu, Qing;Liu, Junjie;Sun, Bingrui;Mao, Xingxue;Jiang, Liqun;Zhang, Jing;Lv, Shuwei;Yu, Hang;Liu, Wei;Li, Chen;Wang, Junjie;Mo, Qiaoping;Chen, Weixiong
关键词：Xanthomonas oryzae; Xa23; AH28; RNA-seq; metabolome
-
Genome-Wide Identification and Expression Analysis of the Class III Peroxidase Gene Family under Abiotic Stresses in Litchi (Litchi chinensis Sonn.)
作者：Yang, Jie;Chen, Rong;Xiang, Xu;Liu, Wei;Fan, Chao
关键词：litchi; PRX gene family; phylogenetic tree; abiotic stresses; expression pattern
-
Genome-wide detection of multiple variants associated with teat number in French Yorkshire pigs
作者：Lin, Danyang;Qiu, Yibin;Zhou, Fuchen;Li, Xuehua;Deng, Shaoxiong;Yang, Jisheng;Chen, Qiaoer;Cai, Gengyuan;Yang, Jie;Wu, Zhenfang;Zheng, Enqin;Lin, Danyang;Qiu, Yibin;Zhou, Fuchen;Li, Xuehua;Deng, Shaoxiong;Yang, Jisheng;Chen, Qiaoer;Cai, Gengyuan;Yang, Jie;Wu, Zhenfang;Zheng, Enqin;Cai, Gengyuan;Wu, Zhenfang;Cai, Gengyuan;Yang, Jie;Wu, Zhenfang;Wu, Zhenfang
关键词：Teat number; Copy number variation; Genome-wide association study; French Yorkshire pigs
-
Identification and Comprehensive Analysis of OFP Genes for Fruit Shape Influence in Mango
作者：Wu, Qiuping;Yang, Jie;Chen, Rong;Fan, Chao;Xia, Rui;Zeng, Zaohai
关键词：mango (Mangifera indica L.); OVATE family proteins; expression pattern; fruit development
-
A deep learning-based approach for fully automated segmentation and quantitative analysis of muscle fibers in pig skeletal muscle
作者：Yao, Zekai;Li, Hao;Li, Xinxin;Li, Jianhao;Luo, Yizhi;Meng, Fanming;Yao, Zekai;Zheng, Enqin;Yang, Jie;Li, Hao;Li, Xinxin;Wang, Ting;Fan, Zhenfei;Zhan, Yuexin;Yang, Yingshan;Wu, Zhenfang;Yao, Zekai;Zheng, Enqin;Yang, Jie;Li, Hao;Li, Xinxin;Wang, Ting;Fan, Zhenfei;Zhan, Yuexin;Yang, Yingshan;Wu, Zhenfang;Wo, Jingjie;Yin, Ling;Wu, Zhenfang;Luo, Yizhi;Zheng, Enqin;Yang, Jie;Wu, Zhenfang
关键词：Pigs; Skeletal muscle; Deep learning; Image segmentation; Quantitative analysis
-
Multi-omic characterization of allele-specific regulatory variation in hybrid pigs
作者：Quan, Jianping;Wang, Xingwang;Cai, Gengyuan;Ding, Rongrong;Zhuang, Zhanwei;Zhou, Shenping;Ruan, Donglin;Wu, Jiajin;Zheng, Enqin;Zhang, Zebin;Liu, Langqing;Meng, Fanming;Wu, Jie;Xu, Cineng;Qiu, Yibin;Wang, Shiyuan;Lin, Meng;Li, Shaoyun;Ye, Yong;Zhou, Fuchen;Lin, Danyang;Li, Xuehua;Deng, Shaoxiong;Zhang, Yuling;Yao, Zekai;Yang, Yingshan;Liu, Yiyi;Zhan, Yuexin;Zhang, Jiaming;Ma, Fucai;Yang, Jifei;Chen, Qiaoer;Yang, Jisheng;Gu, Ting;Huang, Sixiu;Xu, Zheng;Li, Zicong;Yang, Jie;Wu, Zhenfang;Quan, Jianping;Ding, Rongrong;Tan, Suxu;Huang, Wen;Quan, Jianping;Cai, Gengyuan;Wu, Jiajin;Zheng, Enqin;Zhang, Zebin;Liu, Langqing;Lin, Meng;Huang, Sixiu;Yang, Jie;Quan, Jianping;Ding, Rongrong;Ye, Jian;Dong, Linsong;Wu, Zhenfang;Yang, Ming;Gao, Xin;Liu, Zhihong;Yang, Ming;Ding, Rongrong;Ye, Jian;Dong, Linsong;Wu, Zhenfang;Wang, Xingwang;Cai, Gengyuan;Zhuang, Zhanwei;Zhou, Shenping;Ruan, Donglin;Wu, Jiajin;Zheng, Enqin;Zhang, Zebin;Liu, Langqing;Wu, Jie;Xu, Cineng;Qiu, Yibin;Wang, Shiyuan;Li, Shaoyun;Ye, Yong;Zhou, Fuchen;Lin, Danyang;Li, Xuehua;Deng, Shaoxiong;Zhang, Yuling;Yao, Zekai;Yang, Yingshan;Liu, Yiyi;Zhan, Yuexin;Zhang, Jiaming;Ma, Fucai;Yang, Jifei;Gu, Ting;Xu, Zheng;Li, Zicong;Yang, Jie;Meng, Fanming
关键词：
-
Haplotype-resolved chromosome-level genome of hexaploid Jerusalem artichoke provides insights into its origin, evolution, and inulin metabolism
作者：Wang, Sen;Wang, Anqi;Chen, Rong;Xu, Dong;Wang, Hengchao;Jiang, Fan;Liu, Hangwei;Qian, Wanqiang;Fan, Wei;Wang, Sen;Chen, Rong
关键词：Helianthus tuberosus; hexaploid genome; hybridization origin; chromosome rearrangement; inulin metabolism genes
