中国水产科学研究院机构知识库

Development of polymorphic microsatellite markers from barfin flounder (Verasper moseri) and their cross-species amplification

收藏
分享
全文链接

文献类型：外文期刊

作者： Miao, Gui-Dong ¹ ; Shao, Chang-Wei ¹ ; Liao, Xiao-Lin ¹ ; Ma, Hong-Yu ¹ ; Tian, Yong-Sheng ¹ ; Chen, Song-Lin ¹ ;

作者机构： 1.Chinese Acad Fishery Sci, Key Lab Sustainable Utilizat Marine Fisheries Res, Minist Agr, Yellow Sea Fisheries Res Inst, Qingdao 266071, Peoples R China

2.Ocean Univ China, Coll Marine Life Sci, Qingdao 266003, Peoples R China

关键词： Barfin flounder;Verasper moseri;Microsatellites;SSR

期刊名称：CONSERVATION GENETICS （影响因子：2.538；五年影响因子：2.32 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Barfin flounder (Verasper moseri) is a rare fish species in the world. Here, we reported 10 polymorphic microsatellite loci isolated from a dinucleotide-enriched genomic library of barfin flounder (Verasper moseri). The number of alleles, observed, and expected heterozygosity per locus in a test population ranged from 2 to 6, from 0.3333 to 1.0000, and from 0.4866 to 0.7774, respectively. One locus significantly deviated from Hardy-Weinberg equilibrium after Bonferroni correction and no significant linkage disequilibrium was found between pairs of loci. Cross-species amplification of these microsatellite loci in additional five fish species was performed. These polymorphic microsatellite loci would be useful for investigating genetic population structure and construction of genetic linkage map in Verasper moseri.

相关文献

[1]Isolation and characterization of polymorphic microsatellite loci from black sea bass (Centropristis striata) and cross-species amplification. Chen, Song-Lin,Zhao, Lili,Shao, Chang-Wei,Liao, Xiaolin,Tian, Yong-Sheng.

[2]Isolation and characterization of polymorphic microsatellite loci from black snapper Sebastodes fuscescens (Houttuyn). Yang, Jing-Feng,Zhao, Li-Li,Shao, Chang-Wei,Ji, Xiang-Shan,Liao, Xiao-Lin,Chen, Song-Lin,Yang, Jing-Feng. 2009

[3]Isolation and characterization of polymorphic microsatellite loci from fat greenling (Hexagrammos otakii). Chen, Song-Lin,Miao, Gui-Dong,Shao, Chang-Wei,Tian, Yong-Sheng,Liao, Xiaolin. 2009

[4]Isolation and characterization of 10 polymorphic microsatellite loci from small yellow croaker (Pseudosciaena polyactis). Chen, Song-Lin,Xing, Shi-Chao,Xu, Gen-Bo,Liao, Xiaolin,Yang, Jing-Feng,Xing, Shi-Chao. 2009

[5]Isolation and characterization of 12 polymorphic microsatellite markers from ladyfish (Elops saurus Linnaeus). Sha, Zhen-Xia,Xing, Shi-Chao,Shao, Chang-Wei,Tian, Yong-Sheng,Liao, Xiao-Lin,Chen, Song-Lin,Xing, Shi-Chao.

[6]Isolation and characterization of 31 polymorphic microsatellite markers in barfin flounder (Verasper moseri) and the cross-species amplification in spotted halibut (Verasper variegatus). Ma, Hongyu,Chen, Songlin,Ma, Hongyu. 2009

[7]Isolation and characterization of polymorphic microsatellite loci from Silurus Lanzhouensis. Yang, Yuan-Hao,Wang, Feng,Wang, Lv-Zhou,Li, Lei,Yang, Juan-Ning,Li, Yang.

[8]Characterization of 19 polymorphic microsatellite markers for Asian yellow pond turtle (Mauremys mutica). Zhao, Jian,Wen, Ping,Li, Wei,Zhang, Dandan,Zhu, Xinping,Zhao, Jian,Wen, Ping.

[9]Construction of a Genetic Linkage Map and Mapping of a Female-Specific DNA Marker in Half-Smooth Tongue Sole (Cynoglossus semilaevis). Liao, Xiaolin,Ma, Hong-Yu,Xu, Gen-Bo,Shao, Chang-Wei,Tian, Yong-Sheng,Ji, Xiang-Shan,Yang, Jing-Feng,Chen, Song-Lin.

[10]Eighteen novel polymorphic microsatellites for the swimming crab (Portunus trituberculatus). Dong, Zhiguo,Sun, Xiaowen,Dong, Zhiguo,Dong, Zhiguo,Li, Xiaoying,Yan, Binlun.

[11]Evaluating spawning performance among captive Florida pompano Trachinotus carolinus broodstock using microsatellite-based parentage assignment. Ma, Qian,Resley, Matthew J.,Rhody, Nicole R.,Main, Kevan L.,Leber, Kenneth M.,Ma, Qian,Seyoum, Seifu,Tringali, Michael D..

[12]Population structure and genetic diversity of Ammodytes personatus in the Northwestern Pacific revealed by microsatellites markers. Ren, Gui Jing,Hu, Jing Jie,Gao, Tian Xiang,Han, Zhi Qiang.

[13]Isolation and characterization of 12 microsatellite loci from cutlassfish (Trichiurus haumela). Bi, Jin-Zhen,Shao, Chang-Wei,Miao, Gui-Dong,Ma, Hong-Yu,Chen, Song-Lin,Bi, Jin-Zhen.

[14]Genetic variability assessed by microsatellites in the breeding populations of the shrimp Penaeus (Fenneropenaeus) chinensis in China. Zhang, Tianshi,Kong, Jie,Wang, Weiji,Wang, Qingyin,Zhang, Tianshi.

[15]Taxonomic status and genetic diversity of cultured largemouth bass Micropterus salmoides in China. Bai, Junjie,Quan, Yingchun,Liang, Suxian,Lutz-Carrillo, Dijar J.,Liang, Suxian.

[16]A Set of Polymorphic Trinucleotide and Tetranucleotide Microsatellite Markers for Silver Crucian Carp (Carassius auratus gibelio) and Cross-Amplification in Crucian Carp. Zheng, X. H.,Lu, C. Y.,Zhao, Y. Y.,Lee, C.,Cao, D. C.,Chang, Y. M.,Liang, L. Q.,Sun, X. W.,Zheng, X. H.,Zhao, Y. Y.. 2010

[17]Polymorphic dinucleotide microsatellites in tongue sole (Cynoglossus semilaevis). Liao, X.,Shao, C. W.,Tian, Y. S.,Chen, S. L.. 2007

[18]Isolation and characterization of twenty-three polymorphic microsatellite loci in Schizothorax macropogon. Guo, Xiang-Zhao,Wang, Deng-Qiang,Guo, Xiang-Zhao,Zhang, Gui-Rong,Yan, Ruo-Jin,Ji, Wei,Yang, Rui-Bin,Wei, Kai-Jian,Guo, Xiang-Zhao,Zhang, Gui-Rong,Yan, Ruo-Jin,Ji, Wei,Yang, Rui-Bin,Wei, Kai-Jian. 2014

[19]Isolation and characterization of microsatellite markers from Pacific white shrimp (Litopenaeus vannamei). Jia Zhi-Ying,Sun Xiao-Wen,Liang Li-Qun,Li Da-Yu,Lei Qing-Quan. 2006

[20]Isolation and characterization of twenty-six microsatellite loci for the tetraploid fish Dabry's sturgeon (Acipenser dabryanus). Zhang, Shu-Huan,Luo, Hui,Du, Hao,Wang, Deng-Qiang,Wei, Qi-Wei,Zhang, Shu-Huan,Luo, Hui,Du, Hao,Wang, Deng-Qiang,Wei, Qi-Wei. 2013

作者其他论文更多>>

Molecular phylogenetic relationships based on mitochondrial genomes of novel deep-sea corals (Octocorallia: Alcyonacea): Insights into slow evolution and adaptation to extreme deep-sea environments

作者：Wei, Zhan-Fei;Liu, Kai-Qiang;Shao, Chang-Wei;Wei, Zhan-Fei;Ta, Kai-Wen;Zhang, Nan-Nan;Liu, Shan-Shan;Meng, Liang;Liu, Kai-Qiang;Cai, Chong-Yang;Peng, Xiao-Tong

关键词：Mitochondrial genome; Alcyonacea; Ka/Ks evolution; Environmental factors
Molecular phylogenetic relationships based on mitochondrial genomes of novel deep-sea corals (Octocorallia: Alcyonacea): Insights into slow evolution and adaptation to extreme deep-sea environments

作者：Wei, Zhan-Fei;Liu, Kai-Qiang;Shao, Chang-Wei;Zhang, Nan-Nan;Liu, Shan-Shan;Meng, Liang;Cai, Chong-Yang;Ta, Kai-Wen;Peng, Xiao-Tong

关键词：Mitochondrial genome; Alcyonacea; Ka/Ks evolution; Environmental factors
Combined ATAC-seq, RNA-seq, and GWAS analysis reveals glycogen metabolism regulatory network in Jinjiang oyster (Crassostrea ariakensis)

作者：Wu, Biao;Chen, Xi;Wang, Zhen-Yuan;Wang, Yan;Shao, Chang-Wei;Zhou, Li-Qing;Sun, Xiu-Jun;Liu, Zhi-Hong;Wu, Biao;Chen, Xi;Shao, Chang-Wei;Zhou, Li-Qing;Sun, Xiu-Jun;Liu, Zhi-Hong;Hu, Jie;Xu, Da-You;Guo, Hao-Bing;Fan, Guang-Yi;Wang, Zhen-Yuan;Xu, Da-You;Shao, Chang-Wei;Yu, Tao;Wang, Xiao-Mei;Zheng, Yan-Xin;Fan, Guang-Yi

关键词：Crassostrea ariakensis; Glycogen; Transcriptome; ATAC; GWAS
Combined ATAC-seq, RNA-seq, and GWAS analysis reveals glycogen metabolism regulatory network in Jinjiang oyster (Crassostrea ariakensis)

作者：Wu, Biao;Chen, Xi;Wang, Zhen-Yuan;Wang, Yan;Shao, Chang-Wei;Zhou, Li-Qing;Sun, Xiu-Jun;Liu, Zhi-Hong;Wu, Biao;Chen, Xi;Shao, Chang-Wei;Zhou, Li-Qing;Sun, Xiu-Jun;Liu, Zhi-Hong;Hu, Jie;Xu, Da-You;Guo, Hao-Bing;Fan, Guang-Yi;Wang, Zhen-Yuan;Yu, Tao;Wang, Xiao-Mei;Zheng, Yan-Xin;Fan, Guang-Yi

关键词：Crassostrea ariakensis; Glycogen; Transcriptome; ATAC; GWAS
Identification of global alternative splicing and sex-specific splicing via comparative transcriptome analysis of gonads of Chinese tongue sole (Cynoglossus semilaevis)

作者：Lu, Yi-Fang;Li, Cheng-Hua;Lu, Yi-Fang;Liu, Qian;Liu, Kai-Qiang;Wang, Hong-Yan;Wang, Qian;Shao, Chang-Wei;Liu, Kai-Qiang;Wang, Hong-Yan;Wang, Qian;Shao, Chang-Wei;Liu, Qian

关键词：Gonadal differentiation; Alternative splicing; Sex-specific splicing; Cynoglossus semilaevis; Iso-Seq; RNA-Seq
Genome-wide DNA methylation and gene expression patterns of androgenetic haploid tiger pufferfish (Takifugu rubripes) provide insights into haploid syndrome

作者：Zhou, He;Zhou, Zi-Yu;Li, Xin;Sun, Yu-Qing;Shan, Gu;Zheng, Xin-Yi;Chen, Qi;Wang, Wei;Wang, Qian;Shao, Chang-Wei;Wang, Qian;Shao, Chang-Wei;Liu, Hai-Jin

关键词：
SpCrus2 Glycine-Rich Region Contributes Largely to the Antiviral Activity of the Whole-Protein Molecule by Interacting with VP26, a WSSV Structural Protein

作者：Wang, Yue;Ma, Hong-Yu;Wang, Yue;Fang, Wen-Hong;Li, Xin-Cang;Wang, Yue;Ma, Hong-Yu;Zhang, Chao

关键词：Scylla paramamosain; crustin; glycine-rich region (GRR); cysteine-rich region (CRR); WSSV; binding and antiviral activities

Development of polymorphic microsatellite markers from barfin flounder (Verasper moseri) and their cross-species amplification

作者其他论文 更多>>

Molecular phylogenetic relationships based on mitochondrial genomes of novel deep-sea corals (Octocorallia: Alcyonacea): Insights into slow evolution and adaptation to extreme deep-sea environments

Molecular phylogenetic relationships based on mitochondrial genomes of novel deep-sea corals (Octocorallia: Alcyonacea): Insights into slow evolution and adaptation to extreme deep-sea environments

Combined ATAC-seq, RNA-seq, and GWAS analysis reveals glycogen metabolism regulatory network in Jinjiang oyster (Crassostrea ariakensis)

Combined ATAC-seq, RNA-seq, and GWAS analysis reveals glycogen metabolism regulatory network in Jinjiang oyster (Crassostrea ariakensis)

Identification of global alternative splicing and sex-specific splicing via comparative transcriptome analysis of gonads of Chinese tongue sole (Cynoglossus semilaevis)

Genome-wide DNA methylation and gene expression patterns of androgenetic haploid tiger pufferfish (Takifugu rubripes) provide insights into haploid syndrome

SpCrus2 Glycine-Rich Region Contributes Largely to the Antiviral Activity of the Whole-Protein Molecule by Interacting with VP26, a WSSV Structural Protein

意 见 箱

作者其他论文更多>>

意见箱