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Whole-genome resequencing provides insights into the population structure and domestication signatures of ducks in eastern China

文献类型： 外文期刊

作者： Feng, Peishi 1 ; Zeng, Tao 2 ; Yang, Hua 3 ; Chen, Guohong 4 ; Du, Jinping 5 ; Chen, Li 2 ; Shen, Junda 2 ; Tao, Zhenrong 2 ; Wang, Ping 1 ; Yang, Lin 6 ; Lu, Lizhi 2 ;

作者机构： 1.Zhejiang Univ Technol, Coll Pharmaceut Sci, Hangzhou, Peoples R China

2.Zhejiang Acad Agr Sci, Inst Anim Husb & Vet Med, Hangzhou, Peoples R China

3.Zhejiang Acad Agr Sci, Inst Qual & Stand Agroprod, Hangzhou, Peoples R China

4.Yangzhou Univ, Coll Anim Sci & Technol, Yangzhou, Jiangsu, Peoples R China

5.Hubei Acad Agr Sci, Inst Anim Husb & Vet Sci, Wuhan, Peoples R China

6.South China Agr Univ, Coll Anim Sci, Guangzhou, Peoples R China

关键词： Duck; Domestication; Insulin signaling pathway; Population history; Artificial selection; Adaptation

期刊名称：BMC GENOMICS （ 影响因子：3.969； 五年影响因子：4.478 ）

ISSN： 1471-2164

年卷期： 2021 年 22 卷 1 期

页码：

收录情况： SCI

摘要： Background: Duck is an ancient domesticated animal with high economic value, used for its meat, eggs, and feathers. However, the origin of indigenous Chinese ducks remains elusive. To address this question, we performed whole-genome resequencing to first explore the genetic relationship among variants of these domestic ducks with their potential wild ancestors in eastern China, as well as understand how the their genomes were shaped by different natural and artificial selective pressures. Results: Here, we report the resequencing of 60 ducks from Chinese spot-billed ducks (Anas zonorhyncha), mallards (Anas platyrhnchos), Fenghua ducks, Shaoxing ducks, Shanma ducks and Cherry Valley Pekin ducks of eastern China (ten from each population) at an average effective sequencing depth of similar to 6x per individual. The results of population and demographic analysis revealed a deep phylogenetic split between wild (Chinese spot-billed ducks and mallards) and domestic ducks. By applying selective sweep analysis, we identified that several candidate genes, important pathways and GO categories associated with artificial selection were functionally related to cellular adhesion, type 2 diabetes, lipid metabolism, the cell cycle, liver cell proliferation, and muscle functioning in domestic ducks. Conclusion: Genetic structure analysis showed a close genetic relationship of Chinese spot-billed ducks and mallards, which supported that Chinese spot-billed ducks contributed to the breeding of domestic ducks. During the long history of artificial selection, domestic ducks have developed a complex biological adaptation to captivity.

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