您好，欢迎访问浙江省农业科学院 机构知识库！
浙江省农业科学院机构知识库

全部

  • 全部
  • 标题
  • 学者
  • 机构
  • 关键词

OrchidBase 4.0: a database for orchid genomics and molecular biology

文献类型： 外文期刊

作者： Hsiao, Yu-Yun 1 ; Fu, Chih-Hsiung 1 ; Ho, Sau-Yee 2 ; Li, Chung-, I 3 ; Chen, You-Yi 4 ; Wu, Wan-Lin 1 ; Wang, Jeen-Sh 1 ;

作者机构： 1.Natl Cheng Kung Univ, Orchid Res & Dev Ctr, Tainan 70101, Taiwan

2.Natl Cheng Kung Univ, Dept Elect Engn, Tainan 70101, Taiwan

3.Natl Cheng Kung Univ, Dept Stat, Tainan 70101, Taiwan

4.Natl Cheng Kung Univ, Dept Life Sci, Tainan 70101, Taiwan

5.Natl Cheng Kung Univ, Inst Trop Plant Sci & Microbiol, Tainan 70101, Taiwan

6.Fujian Agr & Forestry Univ, Coll Landscape Architecture, Key Lab Natl Forestry & Grassland Adm Orchid Cons, Fuzhou 350002, Fujian, Peoples R China

7.Zhejiang Acad Agr Sci, Zhejiang Inst Subtrop Crops, Wenzhou 325005, Peoples R China

8.Tsinghua Univ, Sch Life Sci, Beijing 100084, Peoples R China

9.Tsinghua Univ, Tsinghua Berkeley Shenzhen Inst TBSI, Ctr Biotechnol & Biomed, Shenzhen 518055, Peoples R China

10.Tsinghua Univ, Shenzhen Key Lab Gene & Antibody Therapy, Shenzhen Int Grad Sch,State Key Lab Chem Oncogeno, Inst Biopharmaceut & Hlth Engn iBHE,State Key Lab, Shenzhen 518055, Peoples R China

11.Shaoguan Univ, Henry Fok Coll Biol & Agr, Shaoguan 512005, Peoples R China

关键词： Orchid; Whole-genome sequences; Apostasia shenzhenica; Dendrobium catenatum; Phalaenopsis equestris; Database

期刊名称：BMC PLANT BIOLOGY （ 影响因子：4.215； 五年影响因子：4.96 ）

ISSN： 1471-2229

年卷期： 2021 年 21 卷 1 期

页码：

收录情况： SCI

摘要： Background: The Orchid family is the largest families of the monocotyledons and an economically important ornamental plant worldwide. Given the pivotal role of this plant to humans, botanical researchers and breeding communities should have access to valuable genomic and transcriptomic information of this plant. Previously, we established OrchidBase, which contains expressed sequence tags (ESTs) from different tissues and developmental stages of Phalaenopsis as well as biotic and abiotic stress-treated Phalaenopsis. The database includes floral transcriptomic sequences from 10 orchid species across all the five subfamilies of Orchidaceae. Description: Recently, the whole-genome sequences of Apostasia shenzhenica, Dendrobium catenatum, and Phalaenopsis equestris were de novo assembled and analyzed. These datasets were used to develop OrchidBase 4.0, including genomic and transcriptomic data for these three orchid species. OrchidBase 4.0 offers information for gene annotation, gene expression with fragments per kilobase of transcript per millions mapped reads (FPKM), KEGG pathways and BLAST search. In addition, assembled genome sequences and location of genes and miRNAs could be visualized by the genome browser. The online resources in OrchidBase 4.0 can be accessed by browsing or using BLAST. Users can also download the assembled scaffold sequences and the predicted gene and protein sequences of these three orchid species. Conclusions: OrchidBase 4.0 is the first database that contain the whole-genome sequences and annotations of multiple orchid species. OrchidBase 4.0 is available at http://orchidbase.itps.ncku.edu.tw/

  • 相关文献
作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：浙江省农业科学院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台