The significance of the diversity and composition of the cecal microbiota of the Tibetan swine
文献类型： 外文期刊
作者： Yang, Weiping 1 ; Xin, Haiyun 1 ; Cao, Fangjun 1 ; Hou, Jinxing 4 ; Ma, Li 1 ; Bao, Lijuan 1 ; Wang, Fangyuan 1 ; Yu, Zha 1 ;
作者机构： 1.Northwest A&F Univ, Coll Anim Sci & Technol, 22 Xinong Rd, Yangling 712100, Shaanxi, Peoples R China
2.Luoyang Normal Univ, Life Sci Coll, 6 Jiqing Rd, Luoyang 471934, Henan, Peoples R China
3.Guangdong Acad Agr Sci, Inst Anim Sci, 1 Da Feng Rd, Guangzhou 510640, Guangdong, Peoples R China
4.Yangling Vocat & Tec
关键词： Cecal microbiota; 16S rRNA gene; High-throughput sequencing; Tibetan swine; Disease resistance; Herbivorous characteristics
期刊名称：ANNALS OF MICROBIOLOGY （ 影响因子：2.112； 五年影响因子：2.151 ）
ISSN： 1590-4261
年卷期： 2018 年 68 卷 4 期
页码：
收录情况： SCI
摘要： The Tibetan swine (TIS) is a non-ruminant herbivore with high disease resistance. Also, it has the ability to digest plants with high fiber content. However, it is not known whether any relationship exist between these characteristics of the TIS and its cecal microbiota. Thus, this study aims to investigate the cecal microbiota of the adult TIS using high-throughput sequencing techniques in order to explore possible relationships between these unique characteristics of the TIS (high disease resistance and ability to digest high fiber plants) and its cecal microbiota. PIC pigs (lean type) were chosen as controls. The results show that 75,069 valid sequences of the 16S rRNA gene at V4-V5 region were obtained in the cecal content of TIS. They were composed of 15 phyla, 70 genera and divided into 660 Operational Taxonomic Units (OTUs). Bacteroidetes and Firmicutes were the predominant phyla in both breeds, but TIS had more Bacteroidetes than Firmicutes. Also, 42.4% of the cecal bacteria were found to be unclassified and uncultured. Many cellulolytic bacteria were also found in the two breeds. TIS (88.10%) had much higher abundance in the core bacterial communities than PIC pigs (81.29%), and the proportion of Bacteroides and Spirochaetes that can effectively degrade cellulose were 6.01 and 6.40% higher than PIC pigs, respectively, while Proteobacteria that are closely related to gastrointestinal diseases were 1.61% lower than PIC pigs. Thus, the disease resistance of the TIS and its ability to digest plants with high fiber content may be related to high abundance of core bacterial communities as well as the large number of unknown and unclassified bacteria.
- 相关文献
作者其他论文 更多>>
-
A resource of longitudinal RNA-seq data of Holstein cow rumen, duodenum, and colon epithelial cells during the lactation cycle
作者：Gao, Yahui;Liu, George E.;Li, Cong-jun;Baldwin, Ransom L.;Gao, Yahui;Ma, Li;Gao, Yahui
关键词：Holstein cattle; Gene expression; Gastrointestinal tract tissues; Lactation; Functional genome; Molecular genetics
-
Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of 232 complex traits in pigs
作者：Xu, Zhiting;Lin, Qing;Cai, Xiaodian;Zhong, Zhanming;Teng, Jinyan;Zeng, Haonan;Gao, Yahui;Wei, Chen;Zhou, Jun;Zhang, Wenjing;Zhang, Xiaoke;Shi, Shaolei;Wu, Jun;Diao, Shuqi;Liu, Yuqiang;Pan, Xiangchun;Feng, Xueyan;Liu, Ruiqi;Su, Zhanqin;Chang, Chengjie;Zhu, Qianghui;Wu, Yuwei;Zhang, Hao;Yuan, Xiaolong;Li, Jiaqi;Zhang, Zhe;Li, Bingjie;Gao, Yahui;Liu, George E.;Gao, Yahui;Ma, Li;Cai, Zexi;Bai, Zhonghao;Su, Guosheng;Sahana, Goutam;Lund, Mogens Sando;Fang, Lingzhao;Wang, Xiaoqing;Shi, Liangyu;Zhao, Fuping;Wang, Xue;Wang, Yi;Zhang, Zipeng;Ding, Xiangdong;Lin, Yu;Tang, Guoqing;Li, Mingzhou;Li, Xuewei;Liu, Shuli;Yin, Hongwei;Bai, Lijing;Li, Kui;Zhou, Zhongyin;Wang, Qishan;Pan, Yuchun;Xu, Zhong;Peng, Xianwen;Mei, Shuqi;Mo, Delin;Liu, Xiaohong;Chen, Yaosheng;Liu, Yang;Xiang, Ruidong;Xiang, Ruidong;Shen, Xia;Shen, Xia;Shen, Xia;Li, Pinghua;Huang, Ruihua;Li, Pinghua;Huang, Ruihua;Ballester, Maria;Crespo-Piazuelo, Daniel;Amills, Marcel;Clop, Alex;Amills, Marcel;Karlskov-Mortensen, Peter;Fredholm, Merete;Zhang, Qin;Zhao, Yunxiang
关键词：pig; meta-GWAS; PigGTEx; molQTL; complex traits
-
Analysis of Transcriptome Differences Between Subcutaneous and Intramuscular Adipose Tissue of Tibetan Pigs
作者：Li, Xinming;Huang, Qiuyan;Meng, Fanming;Hong, Chun;Li, Baohong;Yang, Yecheng;Qu, Zixiao;Wu, Junda;Li, Fei;Xin, Haiyun;Hu, Bin;Wu, Jie;Du, Zongliang;Wang, Sutian;Huang, Qiuyan;Hu, Chuanhuo;Zhu, Xiangxing;Tang, Dongsheng
关键词：Tibetan pig; fat deposition; subcutaneous fat; intramuscular fat; RNA-seq
-
Transcriptomic profiling of gastrointestinal tracts in dairy cattle during lactation reveals molecular adaptations for milk synthesis
作者：Gao, Yahui;Liu, George E.;Li, Cong-jun;Baldwin, Ransom L.;Gao, Yahui;Ma, Li;Gao, Yahui;Fang, Lingzhao
关键词：
-
Unveiling the Regulatory Mechanism of Tibetan Pigs Adipogenesis Mediated by WNT16: From Differential Phenotypes to the Application of Multi-Omics Approaches
作者：Huang, Qiuyan;Meng, Fanming;Hong, Chun;Li, Xinming;Li, Baohong;Wu, Jie;Xin, Haiyun;Wang, Sutian;Zhang, Kunli;Lin, Sen;Hu, Chuanhuo;Zhu, Xiangxing;Tang, Dongsheng;Pei, Yangli
关键词：pigs; IMF; transcriptome; metabolome; fat deposition
-
The Farm Animal Genotype-Tissue Expression (FarmGTEx) Project
作者：Fang, Lingzhao;Lin, Qing;Bai, Zhonghao;Gong, Mian;Sorensen, Peter;Sahana, Goutam;Lund, Mogens Sando;Li, Jing;Liu, Xinfeng;Teng, Jinyan;Lin, Qing;Gao, Yahui;Pan, Xiangchun;Gong, Wentao;Yuan, Xiaolong;Li, Jiaqi;Zhang, Zhe;Liu, Shuli;Yang, Jian;Liu, Shuli;Yang, Jian;Guan, Dailu;Cheng, Hao;Zhou, Huaijun;Li, Bingjie;Hou, Yali;Gong, Mian;Pan, Zhangyuan;Zhao, Fuping;Jiang, Lin;Zhao, Guiping;Zhou, Zhengkui;Zhou, Rong;Yu, Ying;Chen, Siqian;Hou, Zhuocheng;Wang, Qin;Zhang, Yi;Ding, Xiangdong;Sun, Dongxiao;Zhang, Hao;Yang, Ning;Clark, Emily L.;Smith, Jacqueline;Clark, Emily L.;Smith, Jacqueline;Rawlik, Konrad;Xiang, Ruidong;Chamberlain, Amanda J.;Goddard, Michael E.;Xiang, Ruidong;Xiang, Ruidong;Goddard, Michael E.;Chamberlain, Amanda J.;Littlejohn, Mathew;Littlejohn, Mathew;Larson, Greger;MacHugh, David E.;O'Grady, John F.;MacHugh, David E.;MacHugh, David E.;Jiang, Zhihua;Jiang, Zhihua;Zhang, Haihan;He, Xi;Zhang, Yuebo;Gao, Ning;He, Jun;Yi, Guoqiang;Liu, Yuwen;Tang, Zhonglin;Li, Kui;Zhao, Pengju;Zhou, Yang;Fu, Liangliang;Zhao, Shuhong;Zhou, Yang;Liu, Lei;Zhao, Shuhong;Wang, Xiao;Hao, Dan;Young, Robert S.;Shen, Xia;Young, Robert S.;Shen, Xia;Shen, Xia;Shen, Xia;Xia, Charley;Xia, Charley;Ma, Li;Song, Jiuzhou;Cole, John B.;Cole, John B.;Cole, John B.;Cole, John B.;Baldwin, Ransom L.;Li, Cong-jun;Van Tassell, Curtis P.;Rosen, Benjamin D.;Bhowmik, Nayan;Liu, George E.;Lunney, Joan;Liu, Wansheng;Guan, Leluo;Guan, Leluo;Zhao, Xin;Ibeagha-Awemu, Eveline M.;Luo, Yonglun;Lin, Lin;Luo, Yonglun;Lin, Lin;Canela-Xandri, Oriol;Derks, Martijn F. L.;Crooijmans, Richard P. M. A.;Godia, Marta;Madsen, Ole;Groenen, Martien A. M.;Koltes, James E.;Tuggle, Christopher K.;McCarthy, Fiona M.;Rocha, Dominique;Giuffra, Elisabetta;Amills, Marcel;Clop, Alex;Amills, Marcel;Clop, Alex;Ballester, Maria;Tosser-Klopp, Gwenola;Li, Jing;Fang, Chao;Fang, Ming;Wang, Qishan;Liu, Hehe;Deng, Juan;Jin, Long;Li, Mingzhou;Mo, Delin;Liu, Xiaohong;Chen, Yaosheng;Sun, Hui-Zeng;Li, Cong;Wang, Yu;Jiang, Yu;Wu, Dongdong;Wang, Wenwen;Fan, Xinzhong;Zhang, Qin;Hu, Xiaoxiang;Huang, Wen;Wu, Yang;Wu, Weiwei;Kasper, Claudia;Liu, Xinfeng;Yu, Xiaofei;Cui, Leilei;Cui, Leilei;Zhou, Xiang;Kim, Seyoung;Li, Wei;Im, Hae Kyung;Buckler, Edward S.;Buckler, Edward S.;Buckler, Edward S.;Ren, Bing;Ren, Bing;Schatz, Michael C.;Li, Jingyi Jessica;Palmer, Abraham A.;Palmer, Abraham A.;Frantz, Laurent;Frantz, Laurent
关键词：
-
Novel perspectives on autophagy-oxidative stress-inflammation axis in the orchestration of adipogenesis
作者：Hong, Chun;Li, Xinming;Huang, Qiuyan;Li, Baohong;Xin, Haiyun;Hu, Bin;Meng, Fanming;Li, Jianhao;Wang, Sutian;Zhang, Kunli;Huang, Qiuyan;Hu, Chuanhuo;Zhu, Xiangxing;Tang, Dongsheng;Hu, Chuanhuo;Tao, Chenyu;Cao, Yang;Wang, Hai;Deng, Bo;Wang, Sutian
关键词：adipogenesis; autophagy; inflammation; oxidative stress; immune responses
