Comparative microRNA-seq Analysis Depicts Candidate miRNAs Involved in Skin Color Differentiation in Red Tilapia
文献类型： 外文期刊
作者： Wang, Lanmei 1 ; Zhu, Wenbin 1 ; Dong, Zaijie 1 ; Song, Feibiao 2 ; Dong, Juanjuan 2 ; Fu, Jianjun 1 ;
作者机构： 1.Chinese Acad Fishery Sci, Freshwater Fisheries Res Ctr, Key Lab Freshwater Fisheries & Germplasm Resource, Minist Agr, Wuxi 214081, Peoples R China
2.Nanjing Agr Univ, Wuxi Fisheries Coll, Wuxi 214081, Peoples R China
关键词： miR-seq; skin color; red tilapia; pigment; comparative analysis
期刊名称：INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES （ 影响因子：5.923； 五年影响因子：6.132 ）
ISSN： 1422-0067
年卷期： 2018 年 19 卷 4 期
页码：
收录情况： SCI
摘要： Differentiation and variation in body color has been a growing limitation to the commercial value of red tilapia. Limited microRNA (miRNA) information is available on skin color differentiation and variation in fish so far. In this study, a high-throughput Illumina sequencing of sRNAs was conducted on three color varieties of red tilapia and 81,394,491 raw reads were generated. A total of 158 differentially expressed miRNAs (vertical bar log(2)(fold change)vertical bar >= 1 and q-value <= 0.001) were identified. Target prediction and functional analysis of color-related miRNAs showed that a variety of putative target genes-including slc7a11, mc1r and asip-played potential roles in pigmentation. Moreover; the miRNA-mRNA regulatory network was illustrated to elucidate the pigmentation differentiation, in which miR-138-5p and miR-722 were predicted to play important roles in regulating the pigmentation process. These results advance our understanding of the molecular mechanisms of skin pigmentation differentiation in red tilapia.
- 相关文献
作者其他论文 更多>>
-
Genome-wide methylation and transcriptome analysis in koi carp (Cyprinus carpio var. koi): Uncovering novel molecular mechanisms in skin color differentiation and pigmentation
作者：Shi, Xiulan;Chen, Xiaoyu;Dong, Zaijie;Zhu, Wenbin;Fu, Jianjun;Wang, Lanmei;Luo, Mingkun;Dong, Zaijie;Guo, Jun;Lin, Kai
关键词：Koi carp; Skin color; DNA methylation; RNA-sequencing
-
Unraveling the stress response: How low temperature and nanoparticles impact the chinese mitten crab (Eriocheir sinensis)
作者：Zhou, Zihan;Wang, Lanmei;Zhou, Zihan;Tian, Jian;Jiang, Qichen;Zhou, Zihan;Tay, Yi Juin;Han, Mingming;Si, Qin
关键词：Eriocheir sinensis; Nanoplastics; PI3K-Akt-FoxO; Multi-omics
-
Artificial Induction of Meiotic Gynogenesis in Koi Carp Using Blunt Snout Bream Sperm and Identification of Gynogenetic Offspring
作者：Chen, Xiaoyu;Shi, Xiulan;Dong, Zaijie;Guo, Jun;Lin, Kai;Luo, Mingkun;Dong, Zaijie
关键词：gynogenesis;
koi carp; microsatellite; chromosome; 5S rDNA -
Knockout of the fih gene by CRISPR/Cas9 enhances the hypoxia tolerance in grass carp (Ctenopharyngodon idella)
作者：Zhang, Huimei;Yang, Ziquan;Yuan, Ziming;Chen, Jie;Zheng, Guodong;Zou, Shuming;Zhang, Huimei;Yang, Ziquan;Yuan, Ziming;Chen, Jie;Zheng, Guodong;Zou, Shuming;Zhang, Huimei;Yang, Ziquan;Yuan, Ziming;Chen, Jie;Zheng, Guodong;Zou, Shuming;Fu, Jianjun;Dong, Zaijie;Shen, Rengao
关键词：Grass carp; Fih; Hypoxia tolerance; Apoptosis; hif1 alpha
-
Rice-fish co-culture improves carp (Cyprinus carpio) quality by modulating the gut microbiota and metabolites
作者：Nie, Zhijuan;Xu, Xiaotong;Ji, Yanhan;Gao, Ping;Zhou, Sihan;He, Jian;Liu, Xu;Wang, Baozhan;Nie, Zhijuan;Sun, Yi;Wang, Lanmei;Shao, Nailing;Xu, Pao;Shi, Yu
关键词：Rice-fish co-culture; Gut microbiome; Community assembly; Network analysis
-
Evaluation of muscle quality and movement-related traits in two common carp strains under a rice-fish farming system
作者：Gong, Yating;Zhu, Wenbin;Wang, Lanmei;Dong, Zaijie;Luo, Mingkun;Zhu, Wenbin;Wang, Lanmei;Fu, Jianjun;Dong, Zaijie;Zhang, Xianbo;Qin, Ning
关键词：Cyprinus carpio; Muscle characteristics; Nutrition; Movement; Rice-fish symbiosis system
-
Single nucleotide polymorphism SNP19140160 A > C is a potential breeding locus for fast-growth largemouth bass (Micropterus salmoides)
作者：Hua, Jixiang;Zhong, Chunyi;Wang, Qingchun;Qiang, Jun;Hua, Jixiang;Zhong, Chunyi;Fu, Jianjun;Li, Yan;Tao, Yifan;Dong, Yalun;Lu, Siqi;Liu, Wenting;Qiang, Jun;Chen, Wenhua;Zhu, Geyan;Zhang, Maoyou;Wang, Jian
关键词：Largemouth bass; RAD-seq; SNP; Growth traits; Dominant genotypes
