Genome-wide identification of Chinese shrimp (Fenneropenaeus chinensis) microRNA responsive to low pH stress by deep sequencing
文献类型： 外文期刊
作者： He, Yuying 1 ; Li, Zhaoxia 3 ; Zhang, Haien 4 ; Hu, Shuo 4 ; Wang, Qingyin 1 ; Li, Jian 1 ;
作者机构： 1.Chinese Acad Fishery Sci, Key Lab Sustainable Dev Marine Fisheries, Minist Agr, Yellow Sea Fisheries Res Inst, Qingdao 266071, Shandong, Peoples R China
2.Qingdao Natl Lab Marine Sci & Technol, Funct Lab Marine Fisheries Sci & Food Prod Proc, Qingdao 266200, Shandong, Peoples R China
3.Qingdao Agr Univ, Coll Marine Sci & Engn, Qingdao 266109, Shandong, Peoples R China
4.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai 201306, Peoples R China
关键词： Fenneropenaeus chinensis; microRNA; Low pH stress; HiSeq sequencing
期刊名称：CELL STRESS & CHAPERONES （ 影响因子：3.667； 五年影响因子：3.717 ）
ISSN： 1355-8145
年卷期： 2019 年 24 卷 4 期
页码：
收录情况： SCI
摘要： pH has a great impact on the distribution, growth, behavior, and physiology in many aquatic animals. Here, we analyzed miRNA expression profiles of Chinese shrimp (Fenneropenaeus chinensis) from control pH (8.2) and low pH (6.5)-treated shrimp. Expression analysis identified 6 known miRNAs and 23 novel miRNAs with significantly different expression between control pH 8.2 and low pH 6.5; the predicted target genes of differentially expressed miRNAs were significantly enriched in organic acid metabolic process, oxidoreductase activity, coenzyme binding, cofactor binding, and collagen trimer. Moreover, target genes were significantly enriched in several Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways including citrate cycle, pyruvate metabolism, cytokine-cytokine receptor interaction, tight junction, carbon metabolism, etc. Our survey expanded the number of known shrimp miRNAs and provided comprehensive information about miRNA response to low pH stress.
- 相关文献
作者其他论文 更多>>
-
Comparison of economic and ecological benefits between factory water exchange model and biofloc model based on meta analysis
作者：Wang, Yuzhen;Zhang, Shuangyong;Wang, Yuzhen;Chen, Zhao;Chang, Zhiqiang;Zhang, Shuangyong;Meng, Gao;Li, Jian;Wang, Yuzhen;Chen, Zhao;Chang, Zhiqiang;Zhang, Shuangyong;Meng, Gao;Li, Jian
关键词：Super-intensive culture; Super-intensive biofloc culture; Economic effects; Ecological effects; Carbon sink
-
Detection of favorable QTL alleles and candidate genes for high pH tolerance in Chinese shrimp Fenneropenaeus chinensis via association and linkage maps
作者：Li, Zhaoxia;Wang, Jinye;Jia, Chuanshi;Guan, Chenhui;He, Yuying;He, Yuying
关键词：Fenneropenaeus chinensis; Genome-wide association study; Quantitative trait loci; Selective sweep analysis; High pH tolerance
-
Heat-shock protein 70 reduces apoptosis in the gills and hepatopancreas of Marsupenaeus japonicus under low-temperature stress
作者：Ren, Xianyun;Bian, Xueqiong;Jia, Shaoting;Gao, Tian;Wang, Jiajia;Liu, Ping;Li, Jian;Li, Jitao;Ren, Xianyun;Bian, Xueqiong;Jia, Shaoting;Gao, Tian;Wang, Jiajia;Liu, Ping;Li, Jian;Li, Jitao;Bian, Xueqiong;Gao, Tian;Wang, Junxia
关键词：Marsupenaeus japonicus; MjHSP70; MjHSF1; Low temperature stress; Apoptosis
-
The effects of temperature on the nutritional quality of crayfish (Procambarus clarkii) were analyzed by combining transcriptome, metabolome and intestinal microbiota
作者：Li, Ruichun;Qian, Wenqi;Huang, Li;Bai, Shuyan;Li, Chenhui;Du, Ningning;Cheng, Long;Qin, Dongli;Gao, Lei;Li, Ruichun;Qian, Wenqi;Cheng, Long;Huang, Li;Bai, Shuyan;Li, Chenhui;Du, Ningning;Qin, Dongli;Gao, Lei;Qin, Dongli;Gao, Lei;Xiu, Lei;Yu, Linhai;Guan, Tao;Li, Jian;Chen, Shilong
关键词：Procambarus clarkii; Nutritional quality; Temperature; Transcriptome; Metabolome; Intestinal microbiota
-
Neoclassical economic analysis of water exchange and recirculating aquaculture systems in shrimp farming
作者：Wang, Yuzhen;Zhang, Shuangyong;Wang, Yuzhen;Chen, Zhao;Wang, Jiajia;Chang, Zhiqiang;Zhang, Shuangyong;Meng, Gao;Li, Jian;Wang, Yuzhen;Chen, Zhao;Wang, Jiajia;Chang, Zhiqiang;Zhang, Shuangyong;Meng, Gao;Li, Jian
关键词：Indoor super-intensive culture model; Water exchange model; Recirculating culture model; Bioeconomic analysis
-
Chromosome-level genome assembly of scalloped spiny lobster Panulirus homarus homarus
作者：Sun, Dongfang;Lv, Jianjian;Gao, Baoquan;Jia, Shaoting;Liu, Ping;Li, Jian;Li, Jitao;Ren, Xianyun;Lv, Jianjian;Gao, Baoquan;Liu, Ping;Li, Jian;Li, Jitao;Ren, Xianyun
关键词：
-
Marsupenaeus japonicus HSP90's Function Under Low Temperature Stress
作者：Bian, Xueqiong;Ren, Xianyun;Jia, Shaoting;Gao, Tian;Wang, Jiajia;Liu, Ping;Li, Jian;Li, Jitao;Bian, Xueqiong;Ren, Xianyun;Jia, Shaoting;Gao, Tian;Wang, Jiajia;Liu, Ping;Li, Jian;Li, Jitao;Bian, Xueqiong;Gao, Tian;Wang, Junxia
关键词：Marsupenaeus japonicus; MjHSP90; cold stress; RNAi; apoptosis
