您好，欢迎访问中国水产科学研究院 机构知识库！
中国水产科学研究院机构知识库

全部

  • 全部
  • 标题
  • 学者
  • 机构
  • 关键词

In-depth transcriptome analysis of Coilia ectenes, an important fish resource in the Yangtze River: de novo assembly, gene annotation

文献类型： 外文期刊

作者： Shen, Huaishun 1 ; Gu, Ruobo 1 ; Xu, Gangchun 1 ; Xu, Pao 1 ; Nie, Zijuan 1 ; Hu, Yacheng 2 ;

作者机构： 1.Chinese Acad Fishery Sci, Freshwater Fisheries Res Ctr, Minist Agr, Key Lab Freshwater Fisheries & Germplasm Resource, Wuxi 214081, Peoples R China

2.Nanjing Agr Univ, Wuxi Fisheries Coll, Nanjing 210095, Jiangsu, Peoples R China

关键词： Coilia ectenes;Transcriptome;Transcript;Next generation sequencing

期刊名称：MARINE GENOMICS （ 影响因子：1.71； 五年影响因子：1.969 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Coilia ectenes is an important teleost species in the Yangtze River and a model organism that can be used to study the protection of fish resources. In this report, we performed de nova transcriptome sequencing of ten cDNA libraries from the brain, gill, heart, intestine, kidney, liver, muscle, stomach, ovary, and testis tissues. A total of 352 million raw reads of 100 base pairs were generated, and 130,113 transcripts, corresponding to 65,350 non-redundant transcripts, with a mean length of 1520 bp, were assembled. BLASTx-based gene annotation (E-value < 1 x 10(-5)) allowed the identification of 73,900 transcripts against at least one of four databases, including the NCBI non-redundant database, the GO database, the COG database, and the KEGG database. Our study provides a valuable resource for C. ectenes genomic and transcriptomic data that will facilitate future functional studies of C ectenes. (C) 2015 Published by Elsevier B.V.

  • 相关文献

[1]Genetic variation of Coilia ectenes (Clupeiformes: Engraulidae) revealed by the complete cytochrome b sequences of mitochondrial DNA. Ma, Chunyan,Cheng, Qiqun,Zhang, Qingyi,Zhuang, Ping,Ma, Chunyan,Zhao, Yunlong,Zhang, Qingyi.

[2]Isolation and characterization of polymorphic microsatellite markers from Coilia ectenes. Rong, X. J.,Wang, Q. Y.,Rong, X. J.,Xu, Y. J.,Wang, Q. Y.,Liao, M. J.,Liu, X. Z.,Pan, C. Y.,Zhang, Z.,Wang, Y. G.. 2013

[3]Reconstructing habitat use of Coilia mystus and Coilia ectenes of the Yangtze River estuary, and of Coilia ectenes of Taihu Lake, based on otolith strontium and calcium. Yang, J.,Arai, T.,Liu, H.,Miyazaki, N.,Tsukamoto, K.. 2006

[4]Development of thirty-four novel polymorphic microsatellite markers in Coilia ectenes (Clupeiformes: Engraulidae) and cross-species amplification in two closely related taxa. Chen, Fang,Zeng, Liyan,Cheng, Qiqun,Chen, Fang. 2012

[5]Morphological differences between close populations discernible by multivariate analysis: A case study of genus Coilia (Teleostei : Clupeiforms). Cheng, QQ,Lu, DR,Ma, L. 2005

[6]Genetic structure and differentiation of four lake populations of Coilia ectenes (Clupeiformes: Engraulidae) based on mtDNA control region sequences. Cheng, Qiqun,Zhang, Qingyi,Ma, Chunyan,Guan, Weibing.

[7]Genetic diversity and demographical history of Coilia ectenes (Clupeiformes: Engraulidae) inferred from the complete control region sequences of mitochondrial DNA. Ma, Chunyan,Cheng, Qiqun,Zhang, Qingyi.

[8]PCR-RFLP analysis of cytochrome b gene does not support Coilia ectenes taihuensis being a subspecies of Coilia ectenes. Cheng, QQ,Lu, DR.

[9]The complete mitochondrial genome sequence of Coilia ectenes (Clupeiformes: Engraulidae). Qiao, Huiying,Cheng, Qiqun,Chen, Ying,Chen, Wenming,Zhu, Yuxia,Qiao, Huiying,Chen, Ying,Chen, Wenming,Zhu, Yuxia.

[10]The complete mitochondrial genome of the juvenile Atlantic bluefin tuna Thunnus thynnus (Perciformes, Scombridae). Li, Yanlu,Chen, Chao,Yu, Hong,Peng, Shiming,Sun, Shuguang,Wang, Lu,Kong, Xiangdi,Li, Yanlu,Chen, Chao,Kong, Xiangdi,Chen, Chao,Meng, Xiangjun,Huang, Ying.

[11]The complete mitochondrial genome of the marbled rockfish Sebastiscus marmoratus (Scorpaeniformes, Scorpaenidae) from Japan. Sun, Dianrong,Zhang, Hui,Yanagimoto, Takashi,Yin, Lina,Gao, Tianxiang. 2015

[12]An NGS-based approach for the identification of sex-specific markers in snakehead (Channa argus). Ou, Mi,Yang, Cheng,Huang, Rong,Zhang, Ai-Di,Liao, Lan-Jie,Li, Yong-Ming,He, Li-Bo,Zhu, Zuo-Yan,Wang, Ya-Ping,Ou, Mi,Yang, Cheng,Luo, Qing,Chen, Kun-Ci. 2017

[13]The complete mitochondrial genome of the juvenile Pacific bluefin tuna Thunnus orientalis (Perciformes, Scombridae). Chen, Chao,Chen, Chao,Li, Yanlu,Yu, Hong,Peng, Shiming,Sun, Shuguang,Wang, Lu,Meng, Xiangjun,Huang, Ying,Kong, Xiangdi,Chen, Chao,Li, Yanlu.

[14]Complete mitochondrial genome of Leuciscus waleckii (Cypriniformes: Cyprinidae: Leuciscus). Wang, Baosen,Sun, Jinsheng,Wang, Baosen,Ji, Peifeng,Xu, Jian,Xu, Peng,Sun, Xiaowen,Sun, Jinsheng.

[15]The complete mitochondrial genome of the Oujiang color carp, Cyprinus carpio var. color (Cypriniformes, Cyprinidae). Wang, Baosen,Ji, Peifeng,Wang, Jian,Xu, Peng,Sun, Xiaowen,Wang, Baosen,Sun, Jinsheng,Wang, Chenghui.

[16]Identification and comparative analysis of piRNAs in ovary and testis of Nile tilapia (Oreochromis niloticus). Zhou, Yi,Zhong, Huan,Xiao, Jun,Luo, Yongju,Gan, Xi,Zhou, Yi,Yan, Jinpeng,Yan, Jinpeng,Yu, Fan.

[17]Transcriptome analysis and discovery of genes involved in immune pathways in large yellow croaker (Larimichthys crocea) under high stocking density stress. Sun, Peng,Bao, Peibo,Tang, Baojun,Bao, Peibo.

[18]Identification and expression of cytochrome P450 genes in the Chinese giant salamander Andrias davidianus. Hu, Qiaomu,Xiao, Hanbing,Tian, Haifeng,Meng, Yan.

[19]Identification and Differential Expression of Biomineralization Genes in the Mantle of Pearl Oyster Pinctada fucata. Li, Haimei,Yu, Dahui,Li, Haimei,Yu, Dahui,Li, Haimei,Zhang, Bo,Fan, Sigang,Liu, Baosuo,Su, Jiaqi,Yu, Dahui,Yu, Dahui,Yu, Dahui.

[20]Transcriptomic response to water accommodated fraction of crude oil exposure in the gill of Japanese flounder, Paralichthys olivaceus. Zhu, Lin,Qu, Keming,Xia, Bin,Sun, Xuemei,Chen, Bijuan,Xia, Bin.

作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：中国水产科学研究院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台