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Grain Protein Content Phenotyping in Rice via Hyperspectral Imaging Technology and a Genome-Wide Association Study

文献类型： 外文期刊

作者： Zheng, Hengbiao 1 ; Tang, Weijie 2 ; Yang, Tao 1 ; Zhou, Meng 1 ; Guo, Caili 1 ; Cheng, Tao 1 ; Cao, Weixing 1 ; Zhu, Yan 1 ; Zhang, Yunhui 2 ; Yao, Xia 1 ;

作者机构： 1.Nanjing Agr Univ, MOE Engn Res Ctr Smart Agr, MARA Key Lab Crop Syst Anal & Decis Making, Natl Engn & Technol Ctr Informat Agr NETCIA,Jiangs, Nanjing, Jiangsu, Peoples R China

2.Zhongshan Biol Breeding Lab, Nanjing, Peoples R China

3.Jiangsu Acad Agr Sci, Inst Germplasm Resources & Biotechnol, Prov Key Lab Agrobiol, Nanjing, Jiangsu, Peoples R China

期刊名称：PLANT PHENOMICS （ 影响因子：7.6； 五年影响因子：7.7 ）

ISSN： 2643-6515

年卷期： 2024 年 6 卷

页码：

收录情况： SCI

摘要： Efficient and accurate acquisition of the rice grain protein content (GPC) is important for selecting high- quality rice varieties, and remote sensing technology is an attractive potential method for this task. However, the majority of multispectral sensors are poor predictors of GPC due to their broad spectral bands. Hyperspectral technology provides a new analytical technology for bridging the gap between phenomics and genomics. However, the small size of typical datasets is a constraint for model construction for estimating GPC, limiting their accuracy and reducing their ability to generalize to a wide range of varieties. In this study, we used hyperspectral data of rice grains from 515 japonica varieties and deep convolution generative adversarial networks (DCGANs) to generate simulated data to improve the model accuracy. Features sensitive to GPC were extracted after applying a continuous wavelet transform (CWT), and the estimated GPC model was constructed by partial least squares regression (PLSR). Finally, a genome-wide association study (GWAS) was applied to the measured and generated datasets to detect GPC loci. The results demonstrated that the simulated GPC values generated after 8,000 epochs were closest to the measured values. The wavelet feature (WF 1743, 2 ), obtained from the data with the addition of 200 simulated samples, exhibited the highest GPC estimation accuracy (R2 2 = 0.58 and RRMSE = 6.70%). The GWAS analysis showed that the estimated values based on the simulated data detected the same loci as the measured values, including the OsmtSSB1L gene related to grain storage protein. This study provides a new technique for the efficient genetic study of phenotypic traits in rice based on hyperspectral technology.

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