Transcriptome and Metabolome Insights into Key Genes Regulating Fat Deposition and Meat Quality in Pig Breeds
文献类型: 外文期刊
作者: Kumar, Suthar Teerath 1 ; Zheng, Yunlong 1 ; Xu, Jing 1 ; Zhao, Ziyi 1 ; Zhang, Qi 2 ; Zhang, Yunpeng 1 ; Li, Min 1 ; Zou, Hong 3 ; Azeem, Riaz Muhammad 4 ; Sun, Wu-Sheng 3 ; Zhao, Yuan 1 ; Zhang, Shu-Min 1 ;
作者机构: 1.Jilin Agr Univ, Coll Anim Sci & Technol, Key Lab Anim Prod Prod Qual & Secur, Minist Educ, Changchun 130118, Peoples R China
2.Jilin Acad Agr Sci, Inst Anim Husb & Vet Med, Changchun 130033, Peoples R China
3.Jilin Agr Univ, Coll Anim Sci & Technol, Jilin Prov Engn Res Ctr Anim Probiot, Jilin Prov Key Lab Anim Microecol & Hlth Breeding,, 2888 Xincheng St, Changchun 130118, Peoples R China
4.Jilin Agr Univ, Coll Vet Med, Jilin Prov Key Lab Anim Microecol & Hlth Breeding,, Jilin Prov Engn Res Ctr Anim Probiot,Jilin Prov Ke, Changchun 130118, Peoples R China
关键词: commercial LWLDP breed; insulin signaling pathway; muscle metabolomics; meat quality traits; Songliao Black Pig; transcriptomics
期刊名称:ANIMALS ( 影响因子:2.7; 五年影响因子:3.2 )
ISSN: 2076-2615
年卷期: 2024 年 14 卷 24 期
页码:
收录情况: SCI
摘要: Meat quality is a complex trait that exhibits significant variation across pig breeds, and the regulatory mechanisms governing pork meat quality are not fully elucidated. We compared the transcriptomics and metabolomics of the longissimus dorsi (LD) muscle between the Songliao Black Pig (SBP) and Large White x Landrace Pig (LWLDP) to investigate breed-specific differences in meat quality and underlying regulatory pathways. The results showed that SBP meat had a higher marbling score and backfat thickness, a richer color, a lower shear force, and reduced drip loss. Fatty acid (FA) analysis identified 15 significant FAs in the LWLDP, with docosahexaenoic acid (DHA) in the SBP, while amino acid (AA) analysis revealed no breed-based differences. Transcriptome analysis identified 134 upregulated and 362 downregulated genes in the SBP. Protein-protein interaction (PPI) network analysis found 25 key genes, which are associated with muscle development, fat deposition, and overall meat quality, while genes in the insulin signaling pathway, such as PPP1R3B, PPARGC1A, SOCS1, EIF4E, PRKAR2A, PRKAG2, and FASN, play a crucial role in balancing fat metabolism and catabolism. Metabolomic analysis identified 89 upregulated and 10 downregulated metabolites in the SBP, primarily involved in fructose and mannose metabolism, amino acid biosynthesis, nucleotide sugar metabolism, and glucagon signaling pathways. Gene-metabolite association analysis found that the PPP1R3B gene had a strong association with Thr-Leu, Maltol, D-myo-Inositol-4-phosphate, and Fructose-6-phosphate, while MYOG correlated with Mannose-6-phosphate, Fructose-1-phosphate, Mannose-1-phosphate, and Glucose-6-phosphate. In contrast, NR4A3 and PPARGC1A showed a strong negative correlation with most upregulated metabolites. In conclusion, this study identified functional genes, elucidated the mechanisms associated with meat quality traits, and identified gene-metabolite associations involved in energy metabolism, muscle development, and fat deposition, providing valuable insights into the molecular mechanisms that regulate meat quality between pig breeds.
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