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Genome sequencing reveals evidence of adaptive variation in the genus Zea

文献类型: 外文期刊

作者: Chen, Lu 1 ; Luo, Jingyun 1 ; Jin, Minliang 1 ; Yang, Ning 1 ; Liu, Xiangguo 3 ; Peng, Yong 1 ; Li, Wenqiang 1 ; Phillips, Alyssa 4 ; Cameron, Brenda 5 ; Bernal, Julio S. 6 ; Rellan-Alvarez, Ruben 7 ; Sawers, Ruairidh J. H. 8 ; Liu, Qing 3 ; Yin, Yuejia 3 ; Ye, Xinnan 3 ; Yan, Jiali 1 ; Zhang, Qinghua 1 ; Zhang, Xiaoting 1 ; Wu, Shenshen 1 ; Gui, Songtao 1 ; Wei, Wenjie 1 ; Wang, Yuebin 1 ; Luo, Yun 1 ; Jiang, Chenglin 1 ; Deng, Min 1 ; Jin, Min 1 ; Jian, Liumei 1 ; Yu, Yanhui 1 ; Zhang, Maolin 1 ; Yang, Xiaohong 9 ; Hufford, Matthew B. 10 ; Fernie, Alisdair R. 11 ; Warburton, Marilyn L. 12 ; Ross-Ibarra, Jeffrey 13 ; Yan, Jianbing 1 ;

作者机构: 1.Huazhong Agr Univ, Natl Key Lab Crop Genet Improvement, Wuhan, Peoples R China

2.Hubei Hongshan Lab, Wuhan, Peoples R China

3.Jilin Acad Agr Sci, Inst Agr Biotechnol, Changchun, Peoples R China

4.Univ Calif Davis, Ctr Populat Biol, Davis, CA 95616 USA

5.Univ Calif Davis, Dept Evolut & Ecol, Davis, CA 95616 USA

6.Texas A&M Univ, Dept Entomol, College Stn, TX 77843 USA

7.North Carolina State Univ, Dept Mol & Struct Biochem, Raleigh, NC USA

8.Penn State Univ, Dept Plant Sci, State Coll, PA USA

9.China Agr Univ, Natl Maize Improvement Ctr China, Beijing Key Lab Crop Genet Improvement, Beijing, Peoples R China

10.Iowa State Univ, Dept Ecol Evolut & Organismal Biol, Ames, IA USA

11.Max Planck Inst Mol Plant Physiol, Dept Mol Physiol, Potsdam, Germany

12.Washington State Univ, USDA ARS, Western Reg Plant Intro Stn, Pullman, WA 99164 USA

13.Univ Calif Davis, Dept Evolut & Ecol, Ctr Populat Biol, Genome Ctr, Davis, CA 95616 USA

14.Chinese Acad Sci, State Key Lab Plant Genom, Inst Genet & Dev Biol, Beijing, Peoples R China

15.Chinese Acad Sci, Natl Ctr Plant Gene Res, Inst Genet & Dev Biol, Beijing, Peoples R China

期刊名称:NATURE GENETICS ( 影响因子:41.307; 五年影响因子:39.321 )

ISSN: 1061-4036

年卷期: 2022 年 54 卷 11 期

页码:

收录情况: SCI

摘要: Maize is a globally valuable commodity and one of the most extensively studied genetic model organisms. However, we know surprisingly little about the extent and potential utility of the genetic variation found in wild relatives of maize. Here, we characterize a high-density genomic variation map from 744 genomes encompassing maize and all wild taxa of the genus Zea, identifying over 70 million single-nucleotide polymorphisms. The variation map reveals evidence of selection within taxa displaying novel adaptations. We focus on adaptive alleles in highland teosinte and temperate maize, highlighting the key role of flowering-time-related pathways in their adaptation. To show the utility of variants in these data, we generate mutant alleles for two flowering-time candidate genes. This work provides an extensive sampling of the genetic diversity of Zea, resolving questions on evolution and identifying adaptive variants for direct use in modern breeding.

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