Chromosome-level genome assembly of the mud carp (Cirrhinus molitorella) using PacBio HiFi and Hi-C sequencing
文献类型： 外文期刊
作者： Liu, Haiyang 1 ; Cui, Tongxin 1 ; Liu, Huijuan 1 ; Zhang, Jin 1 ; Luo, Qing 1 ; Fei, Shuzhan 1 ; Chen, Kunci 1 ; Zhu, Xinping 1 ; Zhu, Chunkun 5 ; Li, Bingjie 6 ; Fang, Lingzhao 7 ; Zhao, Jian 1 ; Ou, Mi 1 ;
作者机构： 1.Chinese Acad Fishery Sci, Pearl River Fisheries Res Inst, Key Lab Trop & Subtrop Fishery Resources Applicat, Minist Agr & Rural Affairs, Guangzhou 510380, Peoples R China
2.Zhejiang Ocean Univ, Sch Fishery, Zhoushan 316022, Peoples R China
3.Ningbo Univ, Sch Marine Sci, Ningbo 315211, Peoples R China
4.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai 201306, Peoples R China
5.Huaiyin Normal Univ, Sch Life Sci, Huaian 223300, Peoples R China
6.Scotlands Rural Coll SRUC, Anim & Vet Sci, Roslin Inst Bldg, Edinburgh EH25 9RG, Midlothian, Scotland
7.Aarhus Univ, Ctr Quantitat Genet & Genom, Aarhus, Denmark
期刊名称：SCIENTIFIC DATA （ 影响因子：6.9； 五年影响因子：8.7 ）
ISSN：
年卷期： 2024 年 11 卷 1 期
页码：
收录情况： SCI
摘要： The mud carp (Cirrhinus molitorella) is an important economic farmed fish, mainly distributed in South China and Southeast Asia due to its strong adaptability and high yield. Despite its economic importance, the paucity of genomic information has constrained detailed genetic research and breeding efforts. In this study, we utilized PacBio HiFi long-read sequencing and Hi-C technologies to generate a meticulously assembled chromosome-level genome of the mud carp. This assembly spans 1,033.41 Mb, with an impressive 99.82% distributed across 25 chromosomes. The contig N50 and scaffold N50 are 33.29 Mb and 39.86 Mb, respectively. The completeness of the mud carp genome assembly is highlighted by a BUSCO score of 98.05%. We predict 25,865 protein-coding genes, with a BUSCO score of 96.54%, and functional annotations for 91.83% of these genes. Approximately 52.21% of the genome consists of repeat elements. This high-fidelity genome assembly is a vital resource for advancing molecular breeding, comparative genomics, and evolutionary studies of the mud carp and related species.
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