Comparative Analysis of Blood Transcriptome in the Yangtze Finless Porpoise (Neophocaena asiaeorientalis)
文献类型： 外文期刊
作者： Fang, Di-An 1 ; Liu, Kai 1 ; Xu, Dong-Po 1 ; Wang, Yin-Ping 1 ; Xu, Pao 1 ;
作者机构： 1.Minist Agr & Rural Affairs, CAFS, Freshwater Fisheries Res Ctr, Sci Observing & Expt Stn Fishery Resources & Envi, Wuxi 214081, Jiangsu, Peoples R China
关键词： transcriptome; the Yangtze finless porpoise; population declining; adaptive biology
期刊名称：FISHES （ 影响因子：3.17； 五年影响因子：3.098 ）
ISSN：
年卷期： 2022 年 7 卷 2 期
页码：
收录情况： SCI
摘要： The Yangtze finless porpoise (Neophocaena asiaeorientalis) is the sole freshwater subspecies of Neophocaena phocaenoides, and there is a lack of data on its transcriptome. In this study, we applied RNA-seq technology to assemble, de novo, a transcriptome and analyzed differential expressed genes (DEGs). About 6 Gb of clean data was generated for the Yangtze finless porpoise blood (n = 6) through de novo sequencing. In total, 151,211 unigenes were generated and a total of 119,039 of these unigenes (78.72%) were functionally annotated when searched for within the NCBI Nr, SwissProt, GO, COG, and KEGG databases. Diverse and extensive expressed gene catalogs were sampled for the Yangtze finless porpoise. DESeq2 was used to analyze the differential expression genes (DEGs) obtained from the assembled transcriptome. The results indicated that DEGs have close relationships with the Yangtze finless porpoise's development, evolution and adaptation. Further, we found that genes involved in cetacean TAG synthesis might directly explain the molecular basis of cetacean blubber thickening. These transcriptome data will assist in understanding molecular mechanisms of Yangtze finless porpoise adaptation.
- 相关文献
作者其他论文 更多>>
-
In Vitro Culture of Glochidia and Morphological Changes in Juveniles of the Endangered Freshwater Mussel Solenaia oleivora
作者：Ma, Xueyan;Jin, Wu;Lv, Guohua;Chen, Wanwen;Xu, Dongpo;Xu, Pao;Wen, Haibo;Ma, Xueyan;Jin, Wu;Lv, Guohua;Chen, Wanwen;Xu, Dongpo;Xu, Pao;Hua, Dan;Wen, Haibo;Jin, Wu;Xu, Dongpo;Xu, Pao;Wen, Haibo
关键词：glochidia; in vitro culture; juvenile; morphologic; Solenaia oleivora
-
Chromosome-level genome assembly of the freshwater mussel Sinosolenaia oleivora (Heude, 1877)
作者：Ma, Xueyan;Jin, Wu;Chen, Wanwen;Liu, Qian;Jiang, Haizhou;Zhou, Yanfeng;Xu, Pao;Wen, Haibo;Xu, Dongpo;Ma, Xueyan;Jin, Wu;Chen, Wanwen;Xu, Pao;Wen, Haibo;Xu, Dongpo;Jin, Wu;Liu, Qian;Jiang, Haizhou;Zhou, Yanfeng;Xu, Pao;Wen, Haibo;Xu, Dongpo
关键词：
-
Estimates on age, growth, and mortality of Leuciscus chuanchicus (Kessler 1876) in the Ningxia section of the upper reaches of the Yellow River, China
作者：Xiong, Shuhan;Liu, Jiacheng;Li, Peilun;Wang, Jilong;Xiong, Shuhan;Liu, Jiacheng;Li, Peilun;Wang, Jilong;Xiong, Shuhan;Liu, Jiacheng;Li, Peilun;Wang, Jilong;Liu, Yanbin;Liu, Kai;Wang, Yongjie
关键词：Leuciscus chuanchicus; Growth characteristics; Mortality estimates; Exploitation rate
-
Integrative analysis of metagenome and metabolome provides new insights into intestinal health protection in Coilia nasus larvae via probiotic intervention
作者：Mang, Qi;Xu, Gangchun;Xu, Pao;Mang, Qi;Gao, Jun;Li, Quanjie;Sun, Yi;Xu, Gangchun;Xu, Pao
关键词：Coilia nasus; Lactiplantibacillus plantarum; Gut microbiota; Metabolite; Growth performance; Intestinal health
-
Evaluating eDNA and eRNA metabarcoding for aquatic biodiversity assessment: From bacteria to vertebrates
作者：Zhang, Yan;Qiu, Yu;Zhong, Wenjun;Yang, Jianghua;Zhang, Xiaowei;Zhang, Yan;Altermatt, Florian;Zhang, Yan;Altermatt, Florian;Liu, Kai
关键词：Environmental nucleic acids; Aquatic biodiversity; Organismal size; Species detectability
-
Silencing the fatty acid elongase gene elovl6 induces reprogramming of nutrient metabolism in male Oreochromis niloticus
作者：Tao, Yi-Fan;Zhong, Chun-Yi;Hua, Ji-Xiang;Lu, Si-Qi;Li, Yan;Dong, Ya-Lun;Xu, Pao;Jiang, Bing-Jie;Qiang, Jun;Tao, Yi-Fan;Pan, Yi-Fan;Wang, Qing-Chun;Xu, Pao;Qiang, Jun;Qiang, Jun
关键词：Oreochromis niloticus elovl6; Antisense RNA; Nutrient metabolism; Regulatory mechanism
-
Geographical traceability of flavor compounds in Chinese mitten crab (Eriocheir sinensis): Implications for quality differentiation, authenticity assessment, and mechanism research
作者：Li, Jiayi;Nie, Zhijuan;Hu, Jiawen;Wang, Lanmei;Song, Chao;Xu, Dongpo;Gao, Jiangcao;Xu, Pao;Xu, Gangchun;Nie, Zhijuan;Xu, Gangchun;Xu, Gangchun
关键词：Eriocheir sinensis; Volatile organic compounds; Geographical origin; Elemental analysis; Interaction analysis
