Integrated Analysis of the lncRNA-miRNA-mRNA Expression Profiles in Response to Meloidogyne incognita in Radish (Raphanus sativus L.)
文献类型： 外文期刊
作者： Luo, Xiaobo 1 ; Jin, Yueyue 3 ; Shen, Feng 4 ; Zhang, Wanping 3 ;
作者机构： 1.Guizhou Prov Acad Agr Sci, Guizhou Inst Biotechnol, Guiyang 550003, Peoples R China
2.Guizhou Key Lab Agr Biotechnol, Guiyang 550009, Peoples R China
3.Guizhou Univ, Coll Agr, Guiyang 550003, Peoples R China
4.Jiangsu Coastal Area Inst Agr Sci, Yancheng 224002, Peoples R China
关键词： radish; root-knot nematodes; DElncRNA; DGEs; DEP; DEmiRNA
期刊名称：AGRONOMY-BASEL （ 影响因子：3.4； 五年影响因子：3.8 ）
ISSN：
年卷期： 2024 年 14 卷 8 期
页码：
收录情况： SCI
摘要： Radish is an important root vegetable that is widely grown in Asia. The root-knot nematode (RKN) Meloidogyne incognita seriously affects the growth and development of radish root and causes poor appearance quality. However, the molecular mechanism of radish response to RKNs remains poorly understood. In this study, a total of 220 lncRNAs, 1144 mRNAs, 20 miRNAs and 153 proteins were differential expressed between the RKN-infected and WT samples. Correlation analysis of all DEPs compared with all DGEs showed that 8 mRNAs-DEPs showed a changed abundance. The results showed that 18 DEmiRNAs have 167 target DEGs in 220 miRNA-target modules and 29 DElncRNAs were predicted as putative targets of 16 DEmiRNAs in 37 miRNA-target modules. In all, 6 DGEs in the ABA pathway and 2 DGEs in the JA pathway were identified under RKN infection, respectively. The four regulatory networks of lncRNA-miRNA-mRNA were constructed in response to RKN infection. qRT-PCR analysis found that the expression pattern of 6 DElncRNAs, 6 DEmRNAs, 6 DEmiRNAs and 6 DEPs were consistent with sequencing results. These results provide a theoretical basis for studying the molecular mechanism of radish in response to M. incognita and breeding resistant varieties to this nematode.
- 相关文献
作者其他论文 更多>>
-
Comprehensive transcriptome analysis reveals StMAPK7 regulate cold response in potato
作者：Luo, Xiaobo;Ye, Ximiao;Zhao, Degang;Luo, Xiaobo;Chen, Mingjun;Li, Fei;Luo, Xiaobo
关键词：Potato; Cold stress; Cold acclimation; Transcriptome; WGCNA; StMAPK7
-
Overexpression of StBBX14 Enhances Cold Tolerance in Potato
作者：Zhang, Heng;Song, Li;Zhang, Heng;Chen, Mingjun;Luo, Xiaobo;Li, Fei;Luo, Xiaobo
关键词：potato; cold resistance; BBX gene; overexpression; transcriptome; WGCNA
-
Comparative Analyses of Physiological and Transcriptomic Responses Reveal Chive (Allium ascalonicum L.) Bolting Tolerance Mechanisms
作者：Ou, Siyang;Yang, Liuyan;Yuan, Tingting;Li, Mutong;Zhang, Wanping;Geng, Guangdong;Zhang, Suqin;Liao, Guohui
关键词：Allium ascalonicum L.; bolting tolerance; floral bud differentiation; transcriptome analysis; physiological analysis
-
Genome-wide identification and expression analysis of the CONSTANS-like family in potato (Solanum tuberosum L.)
作者：Yin, Wang;Wang, Luo;Shu, Qiqiong;Chen, Mingjun;Li, Fei;Luo, Xiaobo;Wang, Luo;Li, Fei;Luo, Xiaobo;Wang, Luo;Luo, Xiaobo
关键词：CONSTANS-like; gene family; tuberization; cold stress; qRT-PCR
-
Fine mapping and analysis of candidate genes for qBT2andqBT7.2 locus controlling bolting time in radish (Raphanussativus L.)
作者：Jin, Yueyue;Li, Yadong;Peng, Xiao;Wu, Linjun;Yang, Guangqian;Xu, Xiuhong;Pei, Yun;Li, Wei;Zhang, Wanping;Luo, Xiaobo;Jin, Yueyue;Li, Yadong;Peng, Xiao;Wu, Linjun;Yang, Guangqian;Xu, Xiuhong;Pei, Yun;Zhang, Wanping;Li, Wei
关键词：
-
Genome-wide identification of long non-coding RNAs and their potential functions in radish response to salt stress
作者：Sun, Xiaochuan;Duan, Weike;Huang, Zhinan;Jin, Cong;Chen, Guodong;Tang, Mingjia;Xu, Liang;Luo, Xiaobo;Shang, Yutong
关键词：lncRNA; salt stress; Raphanus sativus L.; RNA-seq; target genes; Gene Ontology and pathway analyses
-
Genome-Wide Identification and Analysis of the MAPK and MAPKK Gene Families in Potato (Solanum tuberosum L.)
作者：Shang, Yutong;Luo, Xiaobo;Li, Yan;Shang, Yutong;Luo, Xiaobo;Zhang, Heng;Chen, Mingjun;Yin, Wang;Cao, Zhenju;Deng, Renju;Li, Fei
关键词：potato; MAPK; MAPKK; gene family; low-temperature stress
