文献类型： 外文期刊
作者： Wang, Linna 1 ; Li, Zhentong 1 ; Liu, Yang 1 ; Chen, Shuai 1 ; Li, Linlin 1 ; Duan, Pengfei 1 ; Wang, Xinyi 1 ; Li, Wensheng 5 ; Wang, Qingbin 5 ; Zhai, Jieming 5 ; Tian, Yongsheng 1 ;
作者机构： 1.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Qingdao 266071, Peoples R China
2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Fisheries Sci & Food Prod Proc, Qingdao 266000, Peoples R China
3.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai 201306, Peoples R China
4.Chinese Acad Agr Sci, Grad Sch, Beijing 100081, Peoples R China
5.Mingbo Aquat Co Ltd, Laizhou 261400, Peoples R China
关键词： AMP; Epinephelus tukula; Hi-C; Genome assembly; PacBio long-read sequencing
期刊名称：GENOMICS （ 影响因子：4.31； 五年影响因子：4.38 ）
ISSN： 0888-7543
年卷期： 2022 年 114 卷 5 期
页码：
收录情况： SCI
摘要： The potato grouper, Epinephelus tukula, is one of the largest coral reef teleost, and it is an important germplasm resource for selection and cross breeding. Here we report a potato grouper genome assembly generated using PacBio long-read sequencing, Illumina sequencing and high-throughput chromatin conformation capture (Hi-C) technology. The genome size was 1.13 Gb, with a total of 508 contigs anchored into 24 chromosomes. The scaffold N50 was 42.65 Mb. For the genome models, our assembled genome contained 98.11% complete BUSCO with the vertebrata_odb9 database. One more copies of Gh and Hsp90b1 were identified in the E. tukula genome, which might contribute to its fast growth and high resistance to stress. In addition, 435 putative antimicrobial peptide (AMP) genes were identified in the potato grouper. This study provides a good reference for whole genome selective breeding of the potato grouper and for future development of novel marine drugs.
- 相关文献
作者其他论文 更多>>
-
Structure dependence of the enhanced sulfur tolerance of core-shell CoMn oxides for benzene oxidation: Discrepant sulfur species and less affected reactant activation
作者：Liu, Yang;Cheng, Lin;Zhang, Di;Zhan, Jingjing;Shan, Jiajia;Zhou, Hao;Yi, Xianliang;Li, Zhonghong;Shen, Xudong
关键词：VOCs; Catalytic oxidation; Manganese oxide; Cobalt decoration; Sulfur resistance
-
Effects of Different Light Spectra on Oxidative Stress and Nutritional Quality of the Fish Plectropomus leopardus
作者：Li, Wensheng;Zhang, Zheng;Liu, Baoliang;Fang, Yingying;Cao, Shuquan;Li, Wenyang;Fei, Fan;Li, Wensheng;Liu, Baoliang;Sun, Yan;He, Chengbin;Zhang, Chuanxin
关键词：light spectra; blood biochemistry; antioxidant stress; nutritional quality; Plectropomus leopardus; light spectra; blood biochemistry; antioxidant stress; nutritional quality; Plectropomus leopardus
-
Single atom Z-scheme heterostructure catalysts of photosensitive metal-organic nanorings and graphite-C3N4 for visible light-driven hydrogen production
作者：Hou, Chao-Ping;Liu, Yang;Liu, Jia-Xin;Li, Xin-Ao;Liang, Zi-Zhan;Liu, Jun-Min;Hou, Chao-Ping;Tan, Li-Lin
关键词：Metal-organic nanoring; Z-scheme heterojunction; Single-atom catalyst; Photocatalytic hydrogen evolution
-
Spatial-temporal distribution of phytoplankton HAB species and contamination status of oyster toxins under intensive oyster farming in Jiangmen coasts, the South China Sea
作者：Zou, Jian;Xiao, Yayuan;Su, Jiaqi;Wu, Peng;Wang, Teng;Lin, Lin;Li, Chunhou;Liu, Yu;Liu, Yong;Zou, Jian;Xiao, Yayuan;Wu, Peng;Wang, Teng;Liu, Yong;Liu, Yang;Wang, Teng;Liu, Yu;Liu, Yong
关键词：HAB species of phytoplankton; Alexandrium pacificum; Paralytic shellfish poisoning; Diarrhetic shellfish poisoning; Jiangmen oyster farming area
-
Increases in forest carbon stocks of up to 32% by 2100 across the subalpine forests of the Tibetan Plateau
作者：Li, Ting;Wang, Huan;Wang, Jicheng;Li, Xiaorui;Wang, Qi;Wang, Qi;Liao, Zhanmang;Luo, Peng;Luo, Peng;Lai, Changhong;Liu, Yang;Jian, Yi
关键词：Climate velocity; Forest recovery; Growth; Mortality; Mountain forests; Stand age
-
Chromosome-level genome assembly of flathead asp (Pseudaspius leptocephalus)
作者：Gong, Xiong;Geng, Longwu;Gong, Xiong;Geng, Longwu;Gong, Xiong;Ding, Zufa;Wang, Cheng;Qian, Yuting;Chen, Wenjun;Yu, Dan;Liu, Yang;Zheng, Lingling;Yang, Liandong;Gong, Xiong;Chen, Wenjun;Liu, Yang;Zheng, Lingling;Ding, Zufa;Jiang, Haifeng
关键词：
-
Analysis of correlation between daily rhythm of digestion and metabolism of grouper (Epinephelus lanceolatus♂ x Epinephelus fuscoguttatus♀) and water quality parameters in recycling aquaculture system
作者：Li, Wenyang;Li, Hongxu;Fei, Fan;Gao, Xiaoqiang;Cao, Shuquan;Liu, Baoliang;Li, Wensheng;Liu, Baoliang;Jin, Bo
关键词：Daily rhythm; Recycling aquaculture system; Water quality;
Epinephelus lanceolatus male xEpinephelus fuscoguttatus female
