Transcriptome and Small RNA Sequencing Reveal the Mechanisms Regulating Harvest Index in Brassica napus
文献类型： 外文期刊
作者： Zhang, Chao 1 ; Chang, Wei 1 ; Li, Xiaodong 1 ; Yang, Bo 1 ; Zhang, Liyuan 1 ; Xiao, Zhongchun 1 ; Li, Jiana 1 ; Lu, Kun 1 ;
作者机构： 1.Southwest Univ, Coll Agron & Biotechnol, Chongqing Rapeseed Engn Res Ctr, Chongqing, Peoples R China
2.Southwest Univ, Acad Agr Sci, Chongqing, Peoples R China
3.Guizhou Acad Agr Sci, Oil Res Inst Guizhou Prov, Guiyang, Peoples R China
4.Minist Educ, Engn Res Ctr South Upland Agr, Chongqing, Peoples R China
关键词： harvest index; transcriptome; miRNA; regulatory network; Brassica napus
期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：6.627； 五年影响因子：7.255 ）
ISSN： 1664-462X
年卷期： 2022 年 13 卷
页码：
收录情况： SCI
摘要： Harvest index (HI), the ratio of harvested seed weight to total aboveground biomass weight, is an economically critical value reflecting the convergence of complex agronomic traits. HI values in rapeseed (Brassica napus) remain much lower than in other major crops, and the underlying regulatory network is largely unknown. In this study, we performed mRNA and small RNA sequencing to reveal the mechanisms shaping HI in B. napus during the seed-filling stage. A total of 8,410 differentially expressed genes (DEGs) between high-HI and low-HI accessions in four tissues (silique pericarp, seed, leaves, and stem) were identified. Combining with co-expression network, 72 gene modules were identified, and a key gene BnaSTY46 was found to participate in retarded establishment of photosynthetic capacity to influence HI. Further research found that the genes involved in circadian rhythms and response to stimulus may play important roles in HI and that their transcript levels were modulated by differentially expressed microRNAs (DEMs), and we identified 903 microRNAs (miRNAs), including 46 known miRNAs and 857 novel miRNAs. Furthermore, transporter activity-related genes were critical to enhancing HI in good cultivation environments. Of 903 miRNAs, we found that the bna-miR396-Bna.A06SRp34a/Bna.A01EMB3119 pair may control the seed development and the accumulation of storage compounds, thus contributing to higher HI. Our findings uncovered the underlying complex regulatory network behind HI and offer potential approaches to rapeseed improvement.
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