Selection and validation of suitable reference genes for qRT-PCR analysis in pear leaf tissues under distinct training systems
文献类型： 外文期刊
作者： Liu, Zheng 1 ; Cheng, Kexin 1 ; Qin, Zhongqi 1 ; Wu, Tao 1 ; Li, Xianming 1 ; Tu, Junfan 1 ; Yang, Fuchen 1 ; Zhu, Hongya 1 ;
作者机构： 1.Hubei Acad Agr Sci, Res Inst Fruit & Tea, Wuhan, Hubei, Peoples R China
2.Wuhan Univ, Sch Life Sci, Wuhan, Hubei, Peoples R China
期刊名称：PLOS ONE （ 影响因子：3.24； 五年影响因子：3.788 ）
ISSN： 1932-6203
年卷期： 2018 年 13 卷 8 期
页码：
收录情况： SCI
摘要： Training systems generally alter tree architecture, which modulates light microclimate within the canopy, for the purpose of improving photosynthetic efficiency and fruit quality. Gene expression quantification is one of the most important methods for exploring the molecular mechanisms underlying the influence of training systems on pear photosynthesis, and suitable reference genes for gene expression normalization are a prerequisite for this method. In this study, the expression stability of nine common and four novel candidate genes were evaluated in 14 different pear leaf samples in two training systems, including those at four developmental stages (training_period) and from different parts of the trees (training_space), using two distinct algorithms, geNorm and NormFinder. Our results revealed that SKD1 (Suppressor of K+ Transport Growth Defect1)/ YLS8 (Yellow Leaf Specific 8) and ARM (Armadillo) were the most stable single reference genes for the 'training_period' and 'training_space' subsets, respectively, although these single genes were not as stable as the optimal pairs of reference genes, SKD1+YLS8 and ARM+YLS8, respectively. Furthermore, the expression levels of the PpsAPX (Ascorbate peroxidase) gene showed that the arbitrary use of reference genes without previous testing could lead to misinterpretation of data. This work constitutes the first systematic analysis regarding the selection of superior reference genes in training system studies, facilitating the elucidation of gene function in pear and providing valuable information for similar studies in other higher plants.
- 相关文献
作者其他论文 更多>>
-
Effect of auxiliary materials on the formation of humic acid carbon and nitrogen and bacterial dynamics in kitchen waste composting
作者：Zhan, Yabin;Chen, Yunfeng;Yang, Li;Xia, Xiange;Zhan, Yabin;Chang, Su;Chen, Yanting;Chang, Yuan;Chen, Yunfeng;Li, Ji;Wei, Yuquan;Zhan, Yabin;Chen, Yanting;Chang, Yuan;Li, Ji;Wei, Yuquan;Chen, Peizhen;Zhang, Longli
关键词：Composting; Bulking agent; Humification process; Lignocellulose fractions; Microbial community
-
Straw Addition Enhances Crop Yield, Soil Aggregation, and Soil Microorganisms in a 14-Year Wheat-Rice Rotation System in Central China
作者：Liu, Bo;Yang, Li;Chen, Yunfeng;Fan, Xianpeng;Zhang, Zhiyi;Duan, Xiaoli;Wu, Maoqian;Xia, Xiange;Xia, Hao;Jiang, Chaoqiang;Jiang, Cuncang;Riaz, Muhammad
关键词：straw application; chemical fertilizer; soil fertility soil aggregate; microbial community
-
Phosphate additives promote humic acid carbon and nitrogen skeleton formation by regulating precursors and composting bacterial communities
作者：Su, Jing;Zhan, Yabin;Chang, Yuan;Chang, Su;Luo, Yan;Xu, Ting;Qiao, Yuhui;Li, Ji;Wei, Yuquan;Su, Jing;Zhan, Yabin;Chang, Yuan;Xu, Ting;Qiao, Yuhui;Li, Ji;Wei, Yuquan;Zhan, Yabin;Chen, Yunfeng;Yang, Li;Chen, Peizhen
关键词：Food waste; Humification; Superphosphate; Struvite; Nitrogen retention; Ammonium
-
Deciphering the carbon and nitrogen component conversion in humification process mediated by distinct microbial mechanisms in composting from different domestic organic wastes
作者：Zhan, Yabin;Chen, Yunfeng;Yang, Li;Liu, Bo;Zhan, Yabin;Li, Ruoqi;Chen, Wenjie;Chen, Yunfeng;Yang, Li;Liu, Bo;Li, Jun;Chang, Yuan;Wei, Yuquan;Li, Ji;Zhan, Yabin;Li, Ruoqi;Chen, Wenjie;Tao, Xingling;Li, Jun;Chang, Yuan;Wei, Yuquan;Li, Ji;Chen, Peizhen;Wang, Zhigang;Zhang, Hao
关键词：Food waste; Vegetable waste; Composting; Humic acid; Microbial community
-
Comparative physiological, metabolomic and transcriptomic analyses reveal the mechanisms of differences in pear fruit quality between distinct training systems
作者：Liu, Zheng;Li, Xie-Yu;Yang, Li;Cheng, Yin-Sheng;Nie, Xian-Shuang;Wu, Tao
关键词：Pear fruits; Training systems; Canopy environment; Metabolome; Transcriptome; Phenylpropanoid biosynthesis pathway
-
Molecular characteristics and hypovirulence of different RNA viruses in Alternaria spp. strains, the pathogenic agent of pear black spot disease in China
作者：He, Ying;Wang, Qiong;Yang, Yuekun;Hong, Ni;Wang, Guoping;Wang, Liping;Li, Yanshen;Zhu, Hongyan;Wang, Liping
关键词：Pear black spot disease; Alternaria spp.; Mycovirus; High-throughput sequencing (HTS); Molecular diversity; Biological control
-
Modeling and analysis of droplet deposition behavior: From the micro and macro perspectives
作者：Qiao, Baiyu;Liu, Yajia;He, Xiongkui;Wang, Lingxiao;Han, Hu;Zhang, Lanting;Qi, Peng;Liu, Limin;Han, Leng;Xu, Shaoqing;Huang, Zhan;Qiao, Baiyu;Liu, Yajia;He, Xiongkui;Wu, Tao;Yang, Li
关键词：Droplet deposition behavior; Computational fluid dynamics; Spraying parameter; Leaf characteristics
