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The evolution, variation, and expression patterns under development and stress responses of the NAC gene family in the barley pan-genome

文献类型： 外文期刊

作者： Liu, Xin 1 ; Zhang, Minghu 1 ; Su, Jian 1 ; Wu, Lei 3 ; Shen, Mang 3 ; Zhuang, Yamei 2 ; Wang, Qi 4 ; Chen, Gang 2 ;

作者机构： 1.Yibin Univ, Fac Agr Forestry & Food Engn, Yibin, Sichuan, Peoples R China

2.Shandong Acad Agr Sci, Crop Res Inst, Jinan, Shandong, Peoples R China

3.Sichuan Agr Univ, State Key Lab Crop Gene Explorat & Utilizat Southw, Chengdu, Sichuan, Peoples R China

4.Chinese Acad Fishery Sci, Key Lab Aquat Genom, Beijing Key Lab Fishery Biotechnol, Minist Agr & Rural Affairs, Beijing, Peoples R China

关键词： Hordeum vulgare; NAC; pangenome; evolutionary dynamics; pantranscriptome; salt stress response

期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：4.8； 五年影响因子：5.7 ）

ISSN： 1664-462X

年卷期： 2025 年 16 卷

页码：

收录情况： SCI

摘要： The NAC transcription factor family is pivotal in regulating plant development and stress responses, yet its diversity and evolutionary dynamics in barley (Hordeum vulgare) remain underexplored. In this study, we performed a comprehensive pan-genome analysis to identify and characterize the HvNACs across 20 barley accessions. A ranging from 127 to 149 HvNACs were identified in each genome, in which the Morex genome harbored the highest count. These HvNACs were classified into 201 orthogroups, further stratified into core (102), soft-core (18), shell (25), and lineage-specific (56) categories. Phylogenetic analysis delineated them into 12 subfamilies, of which the core genes have undergone strong purifying selection, by contrast, the shell and lineage-specific genes were under relaxed selection constraint, suggesting functional diversification in barley. Genomic variation, such as PAVs and CNVs, largely driven by TEs, highlighted the dynamic nature of NAC loci. Furthermore, transcriptome profiling of the HvNACs demonstrated diverse tissue expression patterns and different response characteristics under salt stress. These findings elucidate the evolutionary and functional dynamics of HvNACs, offering valuable insights for genetic improvement of breeding programs in barley as well as in other crops.

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