您好，欢迎访问中国水产科学研究院 机构知识库！
中国水产科学研究院机构知识库

全部

  • 全部
  • 标题
  • 学者
  • 机构
  • 关键词

Pronounced population genetic differentiation in the rock bream Oplegnathus fasciatus inferred from mitochondrial DNA sequences

文献类型： 外文期刊

作者： Xiao, Yongshuang 1 ; Li, Jun 1 ; Ren, Guijing 2 ; Ma, Daoyuan 1 ; Wang, Yanfeng 1 ; Xiao, ZhiZhong 1 ; Xu, Shihong 1 ;

作者机构： 1.Chinese Acad Sci, Inst Oceanol, Qingdao, Peoples R China

2.Chinese Acad Fishery Sci, East China Sea Fisheries Res Inst, Shanghai, Peoples R China

关键词： COI;control region;Cytb;genetic diversity;genetic structure;Oplegnathus fasciatus

期刊名称：MITOCHONDRIAL DNA PART A （ 影响因子：1.514； 五年影响因子：0.707 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： The population genetic structure of the rock bream (Oplegnathus fasciatus) along the coastal waters of China was estimated based on three mtDNA fragments (D-loop, COI, and Cytb). A total of 112 polymorphic sites were checked, which defined 63 haplotypes.A pattern with high levels of haplotype diversity (hCOi = 0.886 ± 0.034, hCytb = 0.874 ± 0.023) and low levels of nucleotide diversity UCoi = 0.009 ± 0.005, jiCytb = 0.006 ± 0.003) was detected based on the COI and Cytb fragments, and high levels ofgenetic diversity (hD.|00p = 0.995 ± 0.007, Ji = 0.021 ±0.011) were detected from the mtDNA D-loop. The population genetic diversity of O. fasciatus in south China was significantly higher than those of north China. Three genealogical clades were checked in the O. fasciatus populations based on the NJ and MST analyses of mtDNA COI gene sequence, and the genetic distances among the clades ranged from 0.018 to 0.025. Significant population genetic differentiation was also checked based on the Fit (0.331, p = 0.000) and exact p (0.000) test analyses. No significant population differentiations were checked based on mtDNA D-loop and Cytb fragments. Using a variety of phylogenetic methods, coalescent reasoning, and molecular dating interpreted in conjunction with paleoclimatic and physiographic evidences, we inferred that the genetic make-up of extant populations of O. fasciatus was shaped by Pleistocene environmental impacts on the historical demography of this species. Coalescent analyses (neutrality tests, mismatch distribution analysis, and Bayesian skyline analyses) showed that the species along coastline of China has experienced population expansions originated in its most recent history at about 169-175 kya before present.

  • 相关文献

[1]The impact of Yangtze River discharge on the genetic structure of a population of the rock bream, Oplegnathus fasciatus. Xiao, Yongshuang,Ma, Daoyuan,Liu, Qinghua,Xiao, Zhizhong,Li, Jun,Xu, Shihong,Xiao, Yongshuang,Ma, Daoyuan,Liu, Qinghua,Xiao, Zhizhong,Li, Jun,Xu, Shihong,Dai, Ming,Liu, Jing,Cheng, Qiqun.

[2]Demographic History and Population Structure of Blackfin Flounder (Glyptocephalus stelleri) in Japan Revealed by Mitochondrial Control Region Sequences. Xiao, Yongshuang,Gao, Tianxiang,Zhang, Yan,Yanagimoto, Takashi. 2010

[3]Phylogeography and population structure of the red stingray, Dasyatis akajei inferred by mitochondrial control region. Li, Ning,Chen, Xiao,Song, Na,Gao, Tianxiang,Sun, Dianrong,Lin, Qin. 2015

[4]栉孔扇贝、虾夷扇贝及其杂交子代线粒体COI和Cytb基因遗传多样性分析. 于涛,吴彪,杨爱国,周丽青,刘志鸿. 2016

[5]长江上游中华纹胸鮡遗传多样性及遗传结构研究. 张力文,田辉伍,陈大庆,刘绍平,段辛斌,汪登强. 2020

[6]Low mtDNA Cytb diversity and shallow population structure of Eleutheronema tetradactylum in the East China Sea and the South China Sea. Wang, Jianjian,Sun, Peng,Yin, Fei.

[7]Population genetic structure of the point-head flounder, Cleisthenes herzensteini, in the Northwestern Pacific. Xiao, Yongshuang,Gao, Tianxiang,Zhang, Yan,Yanagimoto, Takashi,Xiao, Yongshuang,Li, Jun,Xiao, Zhizhong,Xu, Shihong,Ma, Daoyuan.

[8]Genetic structure and differentiation of four lake populations of Coilia ectenes (Clupeiformes: Engraulidae) based on mtDNA control region sequences. Cheng, Qiqun,Zhang, Qingyi,Ma, Chunyan,Guan, Weibing.

[9]Genetic diversity and demographical history of Coilia ectenes (Clupeiformes: Engraulidae) inferred from the complete control region sequences of mitochondrial DNA. Ma, Chunyan,Cheng, Qiqun,Zhang, Qingyi.

[10]Genetic diversity and population structure of yellow catfish Pelteobagrus fulvidraco from five lakes in the middle and lower reaches of the Yangtze River, China, based on mitochondrial DNA control region. Zhong, Liqiang,Wang, Minghua,Chen, Youming,Qin, Qin,Pan, Jianlin,Chen, Xiaohui,Song, Chao.

[11]Genetic diversity and population structure of Schizopygopsis younghusbandi Regan in the Yarlung Tsangpo River inferred from mitochondrial DNA sequence analysis. Guo, Shan-Shan,Zhang, Gui-Rong,Guo, Xiang-Zhao,Wei, Kai-Jian,Yang, Rui-Bin,Guo, Shan-Shan,Zhang, Gui-Rong,Guo, Xiang-Zhao,Wei, Kai-Jian,Yang, Rui-Bin,Wei, Qi-Wei.

[12]Simple sequence repeat-based analysis of the genetic diversity and population genetic structure of populations of Siniperca chuatsi. Sun, C. F.,Ye, X.,Tian, Y. Y.,Dong, J. J.. 2015

[13]High genetic diversity and differentiation in three red tilapia stocks revealed by microsatellite DNA marker analysis. Zhu, W. B.,Yang, H.,Yuan, X. H.,Dong, Z. J.,Fu, J. J.,Wang, L. M.,Su, S. Y.,Liu, N.,Song, F. B.,Chen, X. T.,Zhu, W. B.,Yuan, X. H.,Dong, Z. J.,Fu, J. J.,Wang, L. M.,Su, S. Y.. 2017

[14]Genetic diversity and structure within and between wild and cultivated Saccharina japonica (Laminariales, Phaeophyta) revealed by SSR markers. Liu, Fuli,Yao, Jianting,Wang, Xiuliang,Duan, Delin,Liu, Fuli,Repnikova, Anna,Galanin, Dmitry A.. 2012

[15]Genetic structure of yellowback sea bream Dentex tumifrons in China inferred from AFLP data. Xia, Junhong,Jiang, Shigui. 2006

[16]Phylogeographic structure of Brachymystax lenok tsinlingensis (Salmonidae) populations in the Qinling Mountains, Shaanxi, based on mtDNA control region. Liu, Haixia,Li, Yang,Liu, Xiaolin,Xiong, Dongmei,Wang, Lixin,Zou, Guiwei,Wei, Qiwei. 2015

[17]Genetic variation of Coilia ectenes (Clupeiformes: Engraulidae) revealed by the complete cytochrome b sequences of mitochondrial DNA. Ma, Chunyan,Cheng, Qiqun,Zhang, Qingyi,Zhuang, Ping,Ma, Chunyan,Zhao, Yunlong,Zhang, Qingyi.

[18]Genetic variability assessed by microsatellites in the breeding populations of the shrimp Penaeus (Fenneropenaeus) chinensis in China. Zhang, Tianshi,Kong, Jie,Wang, Weiji,Wang, Qingyin,Zhang, Tianshi.

[19]Genetic diversity of Pleuronectes yokohamae population revealed by fluorescence microsatellite labeled. Pan, Ting,Zhang, Yan,Li, Fenghui,Pan, Ting,Zhang, Yan,Li, Fenghui,Gao, Tianxiang.

[20]Isolation and characterization of polymorphic microsatellite DNA markers in the rock bream (Oplegnathus fasciatus). Xu, Tianjun,Shao, Changwei,Liao, Xiaolin,Ji, Xiangshan,Chen, Songlin,Xu, Tianjun.

作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：中国水产科学研究院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台