Characterization of skin ulceration syndrome associated microRNAs in sea cucumber Apostichopus japonicus by deep sequencing
文献类型: 外文期刊
作者: Li, Chenghua 1 ; Feng, Weida 1 ; Qiu, Lihua 2 ; Xia, Changge 1 ; Su, Xiurong 1 ; Jin, Chunhua 1 ; Zhou, Tingting 1 ; Zeng 1 ;
作者机构: 1.Ningbo Univ, Sch Marine Sci, Ningbo 315211, Zhejiang, Peoples R China
2.Chinese Acad Fishery Sci, S China Sea Fishery Res Inst, Guangzhou 510301, Guangdong, Peoples R China
3.Ningbo City Coll Vocat Technol, Ningbo 315100, Zhejiang, Peoples R China
关键词: Apostichopus japonicus;Skin ulceration syndrome;MicroRNA;Deep sequencing
期刊名称:FISH & SHELLFISH IMMUNOLOGY ( 影响因子:4.581; 五年影响因子:4.851 )
ISSN: 1050-4648
年卷期: 2012 年 33 卷 2 期
页码:
收录情况: SCI
摘要: MicroRNAs (miRNAs) constitute a family of small RNA species which have been demonstrated to be one of key effectors in mediating host-pathogen interaction. In this study, two haemocytes miRNA libraries were constructed with deep sequenced by illumina Hiseq2000 from healthy (L1) and skin ulceration syndrome Apostichopus japonicus (L2). The high throughput solexa sequencing resulted in 9,579,038 and 7,742,558 clean data from L1 and L2, respectively. Sequences analysis revealed that 40 conserved miRNAs were found in both libraries, in which let-7 and mir-125 were speculated to be clustered together and expressed accordingly. Eighty-six miRNA candidates were also identified by reference genome search and stem-loop structure prediction. Importantly, mir-31 and mir-2008 displayed significant differential expression between the two libraries according to FPKM model, which might be considered as promising targets for elucidating the intrinsic mechanism of skin ulceration syndrome outbreak in the species. (c) 2012 Elsevier Ltd. All rights reserved.
- 相关文献
作者其他论文 更多>>
-
Comparative analysis of the structural and compositional change of spotted sea bass (Lateolabrax maculatus) gut microflora following Aeromonas veronii infection and the effects of Lactobacillus plantarum on these changes
作者:Lin, Changhong;Lin, Changhong;Lin, Changhong;Zhang, Bo;Zhang, Boa;Qiu, Lihua;Zhang, Bo;Wang, Pengfei;Zhang, Boa;Yan, Lulu;Zhao, Chao;Qiu, Lihua;Zhang, Bo;Wang, Pengfei;Zhang, Boa;Yan, Lulu;Zhao, Chao;Qiu, Lihua;Zhang, Bo;Wang, Pengfei;Zhang, Boa;Zhao, Chao;Zhao, Chao
关键词:Lateolabrax maculatus; Aeromonas veronii; Gut microbiota; intestinal flora; pathogen.
-
Rhodiola rosea L. improved intestinal digestive enzyme activities, inflammatory response, barrier and microbiota dysbiosis in Lateolabrax maculatus juveniles fed with high-carbohydrate diets
作者:Zheng, Luzhe;Wang, Zhanzhan;Zhang, Bo;Zhao, Chao;Qiu, Lihua;Zhou, Chuanpeng;Zheng, Luzhe;Zhao, Chao;Yan, Lulu;Wang, Pengfei;Wang, Jun;Wang, Yun;Zhou, Chuanpeng;Yan, Lulu;Wang, Pengfei;Wang, Jun;Wang, Yun;Lin, Heizhao;Zhou, Chuanpeng;Lin, Heizhao
关键词:Intestinal barrier; Intestinal immunity; Inflammatory; Intestinal microbiota; Rhodiola rosea L.; Lateolabrax maculatus
-
Characterization and immune role of class B scavenger receptor member 1 in spotted sea bass (Lateolabrax maculatus)
作者:Fu, Yichen;Lin, Changhong;Fu, Yichen;Zhao, Chao;Lin, Changhong;Zhang, Bo;Yan, Lulu;Wang, Pengfei;Qiu, Lihua;Zhao, Chao;Zhang, Bo;Yan, Lulu;Wang, Pengfei;Qiu, Lihua;Qiu, Lihua
关键词:Lateolabrax maculatus; SRB1; Aeromonas veronii; Immune response
-
Study on the mechanism of miR-7562 regulating ATG5 and ATG12 genes in Penaeus monodon under Vibrio harveyi infection
作者:Zhao, Chao;Wang, Chunlin;Zhao, Chao;Lin, Changhong;Zhang, Bo;Wang, Pengfei;Zhang, Bo;Yan, Lulu;Qiu, Lihua;Zhao, Chao;Zhang, Bo;Wang, Pengfei;Zhang, Bo;Yan, Lulu;Qiu, Lihua;Zhao, Chao;Wang, Pengfei;Qiu, Lihua;Lin, Changhong
关键词:Penaeus monodon; microRNA; Autophagy-related gene; Autophagy; Vibrio harveyi
-
Type II interferons (IFN-γ and IFN-γrel) activate downstream genes through various potential receptor combinations to exert antiviral functions in spotted sea bass (Lateolabrax maculatus)
作者:Yan, Lulu;Guo, Jieyun;Zhao, Chao;Wang, Pengfei;Zhang, Bo;Qiu, Lihua;Wang, Pengfei;Zhang, Bo;Qiu, Lihua;Qiu, Lihua
关键词:Lateolabrax maculatus; Type II IFN; CRFB; ISGs; LBUSV
-
Development of a spotted sea bass (Lateolabrax maculatus) bulbus arteriosus cell line and its application to fish virology and immunology
作者:Yan, Lulu;Wang, Pengfei;Zhao, Chao;Zhang, Bo;Zhang, Bo;Guo, Jieyun;Qiu, Lihua;Yan, Lulu;Wang, Pengfei;Zhao, Chao;Zhang, Bo;Zhang, Bo;Qiu, Lihua;Qiu, Lihua
关键词:Bulbus arteriosus; Cell line; Lateolabrax maculatus; Virus; Actin cytoskeleton
-
Effect of polypropylene microplastics on virus resistance in spotted sea bass (Lateolabrax maculatus)
作者:Yan, Lulu;Yao, Xiaoxiao;Wang, Pengfei;Zhao, Chao;Zhang, Bo;Qiu, Lihua;Yan, Lulu;Wang, Pengfei;Zhao, Chao;Zhang, Bo;Qiu, Lihua;Qiu, Lihua
关键词:Polypropylene microplastics; Spotted sea bass(Lateolabraxmaculatus); Largemouth bass ulcerative syndrome virus; (LBUSV); Spleen cells; Immune tissues