1N-6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses

作者： Zhang, Qian; Cui, Xuean; Zhang, Pingxian; Liu, Jingrong; Riaz, Adeel; Lu, Tiegang; Gu, Xiaofeng; Liang, Zhe; Yu, Hao; Liang, Zhe; Yu, Hao; Ji, Changmian; Yao, Pu; Liu, Min; Zheng, Hongkun; Li, Yun; Yang, Donglei; Wang, Yunpeng; SCI

机构： Chinese Acad Agr Sci, Biotechnol Res Inst, Beijing 100081, Peoples R China; Natl Univ Singapore, Dept Biol Sci, Singapore 117543, Singapore; Natl Univ Singapore, Temasek Life Sci Lab, Singapore 117543, Singapore; Biomarker Technol, Beijing 101300, Peoples R China; Nanjing Ag;

来源：MOLECULAR PLANT

关键词： N-6-methyladenine; 6mA; DNA methylation; Methylome; Oryza sativa; Stress

年份：2018

2Epigenetic Modifications of mRNA and DNA in Plants

作者： Liang, Zhe; Riaz, Adeel; Chachar, Sadaruddin; Gu, Xiaofeng; Liang, Zhe; Ding, Yike; Du, Hai; SCI

机构： Chinese Acad Agr Sci, Biotechnol Res Inst, Beijing 100081, Peoples R China; Heidelberg Univ, Ctr Organismal Studies, D-69120 Heidelberg, Germany; Univ Calif Riverside, Dept Entomol, Riverside, CA 92521 USA; Southwest Univ, Coll Agron & Biotechnol, Chongqing 400715, Peoples R China;

来源：MOLECULAR PLANT

关键词： RNA modification; m(6)A; m(5)C; DNA methylation; 6mA; epigenetics

年份：2020

3Mesostigma viride Genome and Transcriptome Provide Insights into the Origin and Evolution of Streptophyta

作者： Liang, Zhe; Wong, Chui Eng; Yu, Hao; Geng, Yuke; Zhang, Qian; Zhang, Ye; Zhang, Pingxian; Riaz, Adeel; Chachar, Sadaruddin; Wu, Yunwen; Zhang, Pengpeng; Gu, Xiaofeng; Ji, Changmian; Wang, Mingcheng; Zheng, Hongkun; Ji, Changmian; Du, Hai; Wen, Jing; Wu, Yanmin; Ding, Yike; Demko, Viktor; Shen, Lisha; Yu, Hao; Han, Xiao; SCI

机构： Natl Univ Singapore, Dept Biol Sci, Singapore 117543, Singapore; Chinese Acad Agr Sci, Biotechnol Res Inst, Beijing 100081, Peoples R China; Biomarker Technol, Beijing 101300, Peoples R China; Chinese Acad Trop Agr Sci, Inst Trop Biosci & Biotechnol, Haikou 571101, Hainan, Peoples R China; Southwest Univ, Coll Agron & Biotechnol, Chongqing 400715, Peoples R China; Univ Calif Riverside, Dept Entomol, Riverside, CA 92521 USA; Comenius Univ, Fac Nat Sci, Dept Plant Physiol, Bratislava 84215, Slovakia; Natl Univ Singapore, Temasek Life Sci Lab, Singapore 117604, Singapore; Fuzhou Univ, Coll Biol Sci & Engn, Fuzhou 350108, Fujian, Peoples R China;

来源：ADVANCED SCIENCE

关键词： evolution; green algae; Mesostigma viride; multicellularity; Streptophyta

年份：2020

4Chromatin accessibility illuminates single-cell regulatory dynamics of rice root tips

作者： Feng, Dan; Liang, Zhe; Wang, Yifan; Hu, Guihua; Qu, Ruihong; Xie, Shang; Li, Dongwei; Yang, Liwen; Gu, Xiaofeng; Yao, Jiaying; Yuan, Zan; Zhao, Xinai; Ma, Yanfei; Lohmann, Jan U.; SCI

机构： Chinese Acad Agr Sci, Biotechnol Res Inst, Beijing 100081, Peoples R China; Annoroad Gene Technol, Beijing 100176, Peoples R China; Heidelberg Univ, Ctr Organismal Studies, D-69120 Heidelberg, Germany;

来源：BMC BIOLOGY

关键词： Rice; Root; Cell type; Chromatin accessibility; scATAC-seq; Developmental trajectory; Environmental stimulus

年份：2022

5Single-cell RNA-seq of Lotus japonicus provide insights into identification and function of root cell types of legume

作者： Sun, Zhanmin; Li, Linxia; Tang, Yixiong; Gu, Xiaofeng; Wu, Yanmin; Liang, Zhe; Jiang, Sanjie; Liu, Boxin; Wang, Dan; Ran, Qifan; Hu, Lizhen; Xiong, Junbo; SCI

机构： Chinese Acad Agr Sci, Biotechnol Res Inst, Beijing 100081, Peoples R China; BGI Genom, Shenzhen 518083, Peoples R China; China West Normal Univ, Key Lab Southwest China Wildlife Resources Conserv, Nanchong 637002, Peoples R China; Chongqing Acad Anim Sci, Chongqing 402460, Peoples R China; Jiangxi Acad Agr Sci, Inst Anim & Vet Sci, Nanchang 330200, Peoples R China; Hubei Acad Agr Sci, Inst Anim & Vet Sci, Hubei Key Lab Anim Embryo & Mol Breeding, Wuhan 430072, Peoples R China;

来源：JOURNAL OF INTEGRATIVE PLANT BIOLOGY

关键词： genome; legume; Lotus japonicus; single-cell RNA-seq

年份：2023

6Transcriptome-Wide Mapping 5-Methylcytosine by m(5)C RNA Immunoprecipitation Followed by Deep Sequencing in Plant

作者： Gu, Xiaofeng; Liang, Zhe; SCI

机构： Chinese Acad Agr Sci, Biotechnol Res Inst, Beijing, Peoples R China; Natl Univ Singapore, Dept Biol Sci, Singapore, Singapore;

来源：PLANT LONG NON-CODING RNAS: Methods and Protocols

关键词： RNA methylation; 5-Methylcytosine; m(5)C; m(5)C-RIP-seq; RNA immunoprecipitation; Plant

年份：2019

75-Methylcytosine RNA Methylation in &ITArabidopsis Thaliana&IT

作者： Cui, Xuean; Zhang, Qian; Geng, Yuke; Lu, Tiegang; Gu, Xiaofeng; Liang, Zhe; Shen, Lisha; Bao, Shengjie; Zhang, Bin; Yu, Hao; Liang, Zhe; Shen, Lisha; Bao, Shengjie; Zhang, Bin; Yu, Hao; Leo, Vonny; Vardy, Leah A.; SCI

机构： Chinese Acad Agr Sci, Biotechnol Res Inst, Beijing 100081, Peoples R China; Natl Univ Singapore, Dept Biol Sci, Singapore 117543, Singapore; Natl Univ Singapore, Temasek Life Sci Lab, Singapore 117543, Singapore; Natl Univ Singapore, Temasek Li;

来源：MOLECULAR PLANT

关键词： 5-methylcytosine (m(5)C) Arabidopsis RNA methylation TRM4B root development

年份：2017

8N-6-Methyladenosine RNA Modification Regulates Shoot Stem Cell Fate in Arabidopsis

作者： Shen, Lisha; Liang, Zhe; Chen, Ying; Teo, Zhi Wei Norman; Liu, Lu; Yu, Hao; Shen, Lisha; Liang, Zhe; Chen, Ying; Teo, Zhi Wei Norman; Liu, Lu; Yu, Hao; Gu, Xiaofeng; Hou, Xingliang; Cai, Weiling Maggie; Dedon, Peter C.; SCI

机构： Natl Univ Singapore, Temasek Life Sci Lab, 10 Sci Dr 4, Singapore 117543, Singapore; Natl Univ Singapore, Dept Biol Sci, 10 Sci Dr 4, Singapore 117543, Singapore; Chinese Acad Agr Sci, Biotechnol Res Inst, Bei;

来源：DEVELOPMENTAL CELL

9Mass spectrometry-based proteomic landscape of rice reveals a post-transcriptional regulatory role of N⁶-methyladenosine

作者： Li, Shang-Tong; Ke, Yunzhuo; Zhu, Yunke; Huang, Huanwei; Li, Linxia; Hou, Zhiyang; Zhang, Xuemin; Li, Yaping; Liu, Chaofan; Li, Xiulan; Gu, Xiaofeng; Liang, Zhe; Li, Shang-Tong; Xie, Mengjia; Zhu, Tian-Yi; Zhou, Lianqi; Yang, Bing; Meng, Chen; Wang, Faming; Yu, Hao; Yu, Hao; SCI

机构： Chinese Acad Agr Sci, Biotechnol Res Inst, Beijing, Peoples R China; Glbizzia Biosci, Beijing, Peoples R China; Zhejiang Univ, Life Sci Inst, Zhejiang Prov Key Lab Canc Mol Cell Biol, Hangzhou, Peoples R China; Tech Univ Munich, Bavarian Biomol Mass Spectrometry Ctr, Freising Weihenstephan, Germany; Katholieke Univ Leuven, Dept Biosyst, Leuven, Belgium; Natl Univ Singapore, Dept Biol Sci, Singapore, Singapore; Natl Univ Singapore, Temasek Life Sci Lab, Singapore, Singapore;

来源：NATURE PLANTS

年份：2024

10DNA N-6-Adenine Methylation in Arabidopsis thaliana

作者： Liang, Zhe; Shen, Lisha; Bao, Shengjie; Yu, Hao; Liang, Zhe; Shen, Lisha; Bao, Shengjie; Yu, Hao; Cui, Xuean; Geng, Yuke; Lu, Tiegang; Gu, Xiaofeng; Yu, Guoliang; Liang, Fan; Xie, Shang; SCI

机构： Natl Univ Singapore, Dept Biol Sci, Singapore 117543, Singapore; Natl Univ Singapore, Temasek Life Sci Lab, Singapore 117543, Singapore; Chinese Acad Agr Sci, Biotechnol Res Inst, Beijing 100081, Peoples R China; Next Bioscie, Wuhan 430075, Hubei, Peoples R China;

来源：DEVELOPMENTAL CELL

年份：2018