LbCML38 and LbRH52, two reference genes derived from RNASeq data suitable for assessing gene expression in Lycium barbarum L.
文献类型： 外文期刊
作者： Gong, Lei 1 ; Yang, Yajun 2 ; Chen, Yuchao 1 ; Shi, Jing 2 ; Song, Yuxia 1 ; Zhang, Hongxia 3 ;
作者机构： 1.Ningxia Acad Agr & Forestry Sci, Agr Biotechnol Ctr, Ningxia Key Lab Agrobiotechnol, 590 Huanghe East Rd, Yinchuan 750002, Ningxia Hui Nat, Peoples R China
2.Ningxia Univ, Sch Life Sci, 489 Helanshan West Rd, Yinchuan 750021, Ningxia Hui Nat, Peoples R China
3.Chinese Acad Sci, Shanghai Inst Plant Physiol & Ecol, Natl Key Lab Plant Mol Genet, 300 Fenglin Rd, Shanghai 200032, Peoples R China
4.Ludong Univ, Coll Agr, 186 Hongqizhong Rd, Yantai 264025, Peoples R China
期刊名称：SCIENTIFIC REPORTS （ 影响因子：4.379； 五年影响因子：5.133 ）
ISSN： 2045-2322
年卷期： 2016 年 6 卷
页码：
收录情况： SCI
摘要： For quantitative real- time PCR (qRT-PCR) analysis, the key prerequisite that determines result accuracy is the selection of appropriate reference gene(s). Goji (Lycium barbarum L.) is a multi-branched shrub belonging to the Solanaceae family. To date, no systematic screening or evaluation of reference gene(s) in Goji has been performed. In this work, we identified 18 candidate reference genes from the transcriptomic sequencing data of 14 samples of Goji at different developmental stages and under drought stress condition. The expression stability of these candidate genes was rigorously analyzed using qRT-PCR and four different statistical algorithms: geNorm, BestKeeper, NormFinder and RefFinder. Two novel reference genes LbCML38 and LbRH52 showed the most stable expression, whereas the traditionally used reference genes such as LbGAPDH, LbHSP90 and LbTUB showed unstable expression in the tested samples. Expression of a target gene LbMYB1 was also tested and compared using optimal reference genes LbCML38 and LbRH52, mediocre reference gene LbActin7, and poor reference gene LbHSP90 as normalization standards, respectively. As expected, calculation of the target gene expression by normalization against LbCML38, LbActin7 or LbHSP90 showed significant differences. Our findings suggest that LbCML38 and LbRH52 can be used as reference genes for gene expression analysis in Goji.
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